Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30900 288 / 1e-96 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT3G14850 260 / 1e-87 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT1G78710 258 / 3e-85 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT2G42570 253 / 3e-83 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT1G29050 247 / 1e-80 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 246 / 4e-80 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT2G31110 237 / 6e-77 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G58600 218 / 5e-69 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 197 / 8e-61 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT3G62390 191 / 5e-58 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007367 [exp] 281 / 2e-97 AT2G30900 166 / 4e-51 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Lus10000988 [exp] 251 / 3e-82 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10033617 [exp] 250 / 6e-82 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10013929 [exp] 247 / 2e-80 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 245 / 5e-80 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10024176 [exp] 241 / 7e-78 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10039559 [exp] 238 / 2e-77 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10009209 [exp] 238 / 2e-77 AT3G14850 423 / 2e-148 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Lus10002198 [exp] 229 / 1e-73 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G135600 [exp] 337 / 4e-116 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Potri.011G106200 [exp] 289 / 3e-97 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 275 / 9e-92 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.019G090200 [exp] 261 / 2e-86 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G064700 [exp] 259 / 1e-85 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.013G118500 [exp] 248 / 3e-81 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.004G055000 [exp] 245 / 4e-80 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 233 / 2e-75 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.009G072800 [exp] 229 / 1e-73 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.003G201700 [exp] 228 / 5e-73 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10020786 pacid=23140794 polypeptide=Lus10020786 locus=Lus10020786.g ID=Lus10020786.BGIv1.0 annot-version=v1.0 ATGATGTTCGTGGGAGATTCGCTGAGCTTAAACCAGTGGCAATCCCTCACATGCATGCTCTACGTATCTTCCCCGCCAGCCACCAACGTTTACACCTTGA CAAGGAGAGCAGAACTATCCACCTTCACATTCCCGGCATACGATGCACAGATACTCTTCTCTCGCAATGCATTCTTAGTAGACATGGTGGACAACGGAGA CGGTGTGGTTATGAAGCTCGACTCCGTCGCCGAACACTCGAAACGCTGGCTGGGAATGGACTACTTGATCTTCAACACCTGGCATTGGTGGCTCCATACC GGAAGAAAACAACCATGGAAGATCATTCAAGAGGGGAACAGAGCATACCAAGACATGGACCGTCTGGAGGCGTACGAGAAGGCACTACGAACTTGGGCTG ATTGGGTTGACACCAATGTCGACCCTGCCGCTACCACAGTCTTCTTCCAAGGCGTTTCTCCAGATCACGTCAATGGAAGCGAATGGGGAGAGCCAGCTCC CAGCAACTGCAGGGGACAAACACAGCCGTCGGAGTACGACAGCAACAACTACCCGGCTGCTCCTCATCCTGCAGCAGTGATCCTCGACAACGTTCTCCGA CAAATGTCGAAGCCTGTGCATCTGCTGAATGTGACAGCATTGTCTCGTCTGAGGAAAGATGGACATCCGTCGGTGTACGGCCATGGTGGCCACTTGGTCC CGGATTGTAGCCATTGGTGTTTGGCTGGTGTTCCTGATACCTGGAACCACCTCCTTTATGCTTCCATTCTTCAAGGCTAA
AA sequence Show only first row Show all	>Lus10020786 pacid=23140794 polypeptide=Lus10020786 locus=Lus10020786.g ID=Lus10020786.BGIv1.0 annot-version=v1.0 MMFVGDSLSLNQWQSLTCMLYVSSPPATNVYTLTRRAELSTFTFPAYDAQILFSRNAFLVDMVDNGDGVVMKLDSVAEHSKRWLGMDYLIFNTWHWWLHT GRKQPWKIIQEGNRAYQDMDRLEAYEKALRTWADWVDTNVDPAATTVFFQGVSPDHVNGSEWGEPAPSNCRGQTQPSEYDSNNYPAAPHPAAVILDNVLR QMSKPVHLLNVTALSRLRKDGHPSVYGHGGHLVPDCSHWCLAGVPDTWNHLLYASILQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10020786 [exp]	0	1
					Lus10039897 [exp]	1.0	0.9715
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016130 [exp]	2.4	0.9490
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036120 [exp]	6.9	0.9369
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10025840 [exp]	7.8	0.8874
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10029358 [exp]	8.5	0.9520
AT1G20925			Auxin efflux carrier family pr...		Lus10004287 [exp]	13.1	0.7678
					Lus10018225 [exp]	14.3	0.9479
AT3G27470			Protein of unknown function (D...		Lus10022287 [exp]	14.3	0.8412
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004322 [exp]	14.5	0.8388
AT3G45400			exostosin family protein (.1)		Lus10020308 [exp]	15.4	0.8224

Compare expression of checked genes

Lus10020786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.