Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65880 691 / 0 BZO1 benzoyloxyglucosinolate 1 (.1) AT1G65890 688 / 0 AAE12 acyl activating enzyme 12 (.1) AT1G66120 677 / 0 AMP-dependent synthetase and ligase family protein (.1) AT2G17650 552 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G68270 551 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 550 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT5G16370 534 / 0 AAE5 acyl activating enzyme 5 (.1) AT5G16340 532 / 0 AMP-dependent synthetase and ligase family protein (.1) AT3G16910 526 / 0 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G21530 505 / 2e-174 AMP-dependent synthetase and ligase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007369 [exp] 1005 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 839 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10031367 [exp] 701 / 0 AT1G65890 548 / 0.0 acyl activating enzyme 12 (.1) Lus10016011 [exp] 578 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10028375 [exp] 562 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10039161 [exp] 545 / 0 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1) Lus10037734 [exp] 535 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016869 [exp] 534 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016870 [exp] 528 / 0 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G082000 [exp] 830 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.017G138350 [exp] 816 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.017G138451 [exp] 813 / 0 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.016G034800 [exp] 804 / 0 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036300 [exp] 795 / 0 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036200 [exp] 778 / 0 AT1G66120 668 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G010600 [exp] 590 / 0 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G250700 [exp] 584 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G099500 [exp] 561 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G148500 [exp] 550 / 0 AT5G16370 760 / 0.0 acyl activating enzyme 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10020787 pacid=23140965 polypeptide=Lus10020787 locus=Lus10020787.g ID=Lus10020787.BGIv1.0 annot-version=v1.0 ATGGACCAGCTTCCGAAGTGTGATGCAAACTACGTGGCCTTGACCCCAACCACCTTCCTCAAAAGAGCGGCTCAAGCCTACTCCAACCGCACCTCCATCA TCTACGACCGCACTCGCTTCACCTGGCTGCAAACCTACACCCGCTGCTGCCGTCTCGCCTCTTCTCTCCGCTCCCTCAACATCTCCCACCACGACGTCGT CTCTGTCCTGGCCCCCAACGTTCCTGCCATGTACGAGATGCACTTTGCAGTCCCCATGGCCGGAGCCGTCCTCAACCCTATCAACACCAGGCTCGATGCT AACACCGTCGCCACCATCCTCTCCCACTCTACTGCCAAGTTGTTCTTTGTTGATTGCGAGTTCGTCCCCTTGGCGAAGAAGGCCTTGAACCTACTCATGA AGAATGATTCTTCGTCGGGAGTAGTACAGCTTCCTTTGGTGGTTGTCATTGATGATATCGACTCCCCGACTGGGGTCCGTTTGGGAGAGCTGGAGTACGA GCAGTTGGTTCGGAACGGGGACCCACAATTCGTTCCCGAGGAAGTCCGGGACGAATGGGATCCCATCACTTTGAATTATACTTCTGGGACCACGTCGGCT CCCAAGGGAGTTGTGTATAGTCACAGGGGTGCTTATCTGAGCACGCTCAGCCTGATACTGGGCTGGGAGATGGGGAACGAGCCTGTTTACTTGTGGTCGC TCCCTATGTTCCACTGTAACGGGTGGACGTTCACGTGGGGGATTGCTGCTCGCGGAGGCACAAATGTGTGTCTCCGTAACACGACTGCTTTAGATATCTA TAGTAATATCGCGATCCACAAGGTCACTCACATGTGTTGTGCACCTATTGTGTTCAACATCATCCTCGAAGCCAAGCCACATGAGATTCGCCAGCTCACT TCCCGTGTCAACGTCCTCATGGGAGGGGCCCCACCGCCGGCTTCTTTGTTGGAAAAAGTCGAGCCGATGGGATTCCACGTGACCCATGCCTACGGGCTGA CTGAGGCCACTGGGCCTGCTCTGGTCTGTGAGTGGCAGGCCCAGTGGGACAGCCTCCCTAGCAACGAACGTGGTAGGCTGAAGGCTAGACAAGGAGTGAG CATTTTGGGACTGGCTGACGTGGACGTCAAAGATTTGAACACCATGAGGAGCGTGCCACGTGACGGCAAGGTAATGGGGGAGATCGTCCTACGTGGAAGC AGCATCATGAAGGGCTACTTCAAAGACGAGAAGGCTACGGCGGAAGCCTTCAAGAACGGGAAGTGGTTCACCACCGGAGACGTCGGAGTGGTCCACCCGG ACGGCTACGTGGAGATCAAGGACAGGTCGAAGGACGTCATCATCTCCGGCGGCGAGAATATAAGCAGTGTGGAGGTGGAGTCGGTTCTCTACCGCCACCC GAAGATCGTGGAGGCTGCGGTAGTGGCGATGCCTCATCCTGTTTGGGGGGAGAGCCCCTGCGCCTTTGTGGCGGTGAATAATAATAATAACGCCGCCGCT GCCGCGGCGGACGAGGAGGCGGCGATATTGAGCTTCTGCAGGAAGAACATGGCGCATTTCATGGTGCCGAAGAAGGTGGTGTTCATGCCGGAGCTGCCGA AGACGGGCACGGGGAAGATTCAGAAGGGACTGTTGAGGGAAGCGGCGAAGAAGGTGGTGGATGCGGCGGTGGAGGAAGAGAAGAAGCGGAAGATCAACAA AAATAATGCCGCGGTTGGGAGGAAGAGCGGCGGCGGGAGGGGGGGGCGGGGGGGATAA
AA sequence Show only first row Show all	>Lus10020787 pacid=23140965 polypeptide=Lus10020787 locus=Lus10020787.g ID=Lus10020787.BGIv1.0 annot-version=v1.0 MDQLPKCDANYVALTPTTFLKRAAQAYSNRTSIIYDRTRFTWLQTYTRCCRLASSLRSLNISHHDVVSVLAPNVPAMYEMHFAVPMAGAVLNPINTRLDA NTVATILSHSTAKLFFVDCEFVPLAKKALNLLMKNDSSSGVVQLPLVVVIDDIDSPTGVRLGELEYEQLVRNGDPQFVPEEVRDEWDPITLNYTSGTTSA PKGVVYSHRGAYLSTLSLILGWEMGNEPVYLWSLPMFHCNGWTFTWGIAARGGTNVCLRNTTALDIYSNIAIHKVTHMCCAPIVFNIILEAKPHEIRQLT SRVNVLMGGAPPPASLLEKVEPMGFHVTHAYGLTEATGPALVCEWQAQWDSLPSNERGRLKARQGVSILGLADVDVKDLNTMRSVPRDGKVMGEIVLRGS SIMKGYFKDEKATAEAFKNGKWFTTGDVGVVHPDGYVEIKDRSKDVIISGGENISSVEVESVLYRHPKIVEAAVVAMPHPVWGESPCAFVAVNNNNNAAA AAADEEAAILSFCRKNMAHFMVPKKVVFMPELPKTGTGKIQKGLLREAAKKVVDAAVEEEKKRKINKNNAAVGRKSGGGRGGRGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10020787 [exp]	0	1
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008876 [exp]	1.0	0.8807
					Lus10001089 [exp]	1.7	0.8781
AT1G28390			Protein kinase superfamily pro...		Lus10018542 [exp]	2.4	0.8789
AT3G61670			Protein of unknown function (D...		Lus10003040 [exp]	7.2	0.8682
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001090 [exp]	8.9	0.8518
AT2G46380			Protein of unknown function (D...		Lus10005153 [exp]	10.7	0.8673
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10039386 [exp]	11.8	0.8651
AT4G19130			Replication factor-A protein 1...		Lus10034737 [exp]	13.6	0.7700
					Lus10028018 [exp]	14.8	0.7262
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10023818 [exp]	19.7	0.8661

Compare expression of checked genes

Lus10020787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.