Plant FIBer expression Database

Lus10020788 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17310 760 / 0 AtUGP2, UGP2 UDP-glucose pyrophosphorylase 2 (.1.2)
AT3G03250 743 / 0 AtUGP1, UGP1, UGP UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007370
[exp]
886 / 0 AT5G17310 785 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2)
Lus10010957
[exp]
727 / 0 AT3G03250 676 / 0.0 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Lus10031365
[exp]
709 / 0 AT3G03250 662 / 0.0 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Lus10041971
[exp]
309 / 3e-98 AT5G17310 332 / 6e-107 UDP-glucose pyrophosphorylase 2 (.1.2)
Lus10031368
[exp]
66 / 3e-13 AT3G03250 49 / 3e-08 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G144700
[exp]
769 / 0 AT5G17310 782 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2)
Potri.004G074400
[exp]
763 / 0 AT5G17310 759 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2)
Potri.013G070001
[exp]
369 / 1e-121 AT3G03250 375 / 9e-124 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Potri.004G074750
[exp]
231 / 1e-74 AT5G17310 222 / 2e-72 UDP-glucose pyrophosphorylase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF01704 UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence
>Lus10020788 pacid=23140845 polypeptide=Lus10020788 locus=Lus10020788.g ID=Lus10020788.BGIv1.0 annot-version=v1.0
ATGGCCGCCGCTGCCACTGAGAAGCTCTCCGCCTTGAAACCTGCAGTAGCAGCTCTCGATCAGATCAGCGAGAGTGAGAAGAATGGATTCATCAACCTCG
TTTCGCGCTATGTCAGTGGTGAAGCAGAGCATGTGGAGTGGAGTAAGATTAAGACCCCGACTGATGAGATAGTGGTTCCTTATGACACCTTGGCTCCTCT
CTCTGATGATCCAGCGGAAACCAAAAGTCTTCTCGATAAACTAGTCGTGCTGAAGCTGAATGGTGGTTTGGGAACAACGATGGGTTGTACTGGACCTAAA
TCTGTGATTGAAGTCCGTAATGGACTGACGTTCCTTGACCTCATTGTCATGCAGATTGAGAATCTCAATAACAAATATGGATGCAAGGTTCCTCTGCTTC
TGATGAACTCATTCAACACCCACGATGATACAGCAAAGATAGTGGAGAAGTACACAAGTTCAAATGTAGAGATTCATACATTTAATCAGAGTCAGTACCC
ACGTTTGGTTGCTGATGATTTCCTTCCACTACCAAGCAAGGGGCATGCAGGCAAGGATGGATGGTATCCTCCTGGGCATGGCGATGTTTTCCCATCCTTG
AAGAATAGCGGCAAGCTTGATGCGTTATTGTCTCAGGGTAAAGAGTACGTGTTTGTCGCCAACTCCGACAACCTTGGAGCTGTCGTGGATTTGAAGATTC
TAAGCCACTTGATAAAAAACAAGAATGAGTACTGCATGGAGGTAACACCCAAAACATTGGCAGATGTGAAGGGCGGTACCCTCATTTCTTATGATGGGAA
AGTTCAGCTTCTGGAAATAGCACAGGTCCCTGATGAGCATGTTGGTGAGTTCAAGTCAATTGAGAAGTTCAAAATTTTTAACACAAACAACTTGTGGGTC
AACTTGAATGCGATCAAGAGGCTTGTGGAAGCTGATGCTCTAAAAATGGAGATCATTCCCAACCCCAAGGAAGTTGAAGGTATCAAAGTTCTTCAGCTAG
AAACAGCTGCTGGTGCAGCAATTAAGTTTTTCGACAAGGCAATTGGCATCAATGTGCCTCGCTCACGTTTCCTCCCTGTCAAGGCAACTTCAGATTTGCT
TCTTGTCCAGTCCGACCTGTACACCGTGGTGGATGGGTATGTCGTTCGCAACGAGGCCAGAAAGAATCCTGAGAATCCCTCCATTGAACTTGGCCCAGAG
TTCAAGAAGGTTGGCGACTTCTTGAGCCGATTCAAGTCCATCCCCAGCATCATTGAGCTTGATATTCTTAAGGTTGTGGGTGATGTATGGTTCGGCGTTG
GGGTTACCCTCAAGGGGAAGGTGACCATTAAAGCTGTGGAAAAGCTGGAAATACCCGATGGTTCTAACATTGAGAACAAGGACATCACTGGCAAAGGAGA
TCTGTAG
AA sequence
>Lus10020788 pacid=23140845 polypeptide=Lus10020788 locus=Lus10020788.g ID=Lus10020788.BGIv1.0 annot-version=v1.0
MAAAATEKLSALKPAVAALDQISESEKNGFINLVSRYVSGEAEHVEWSKIKTPTDEIVVPYDTLAPLSDDPAETKSLLDKLVVLKLNGGLGTTMGCTGPK
SVIEVRNGLTFLDLIVMQIENLNNKYGCKVPLLLMNSFNTHDDTAKIVEKYTSSNVEIHTFNQSQYPRLVADDFLPLPSKGHAGKDGWYPPGHGDVFPSL
KNSGKLDALLSQGKEYVFVANSDNLGAVVDLKILSHLIKNKNEYCMEVTPKTLADVKGGTLISYDGKVQLLEIAQVPDEHVGEFKSIEKFKIFNTNNLWV
NLNAIKRLVEADALKMEIIPNPKEVEGIKVLQLETAAGAAIKFFDKAIGINVPRSRFLPVKATSDLLLVQSDLYTVVDGYVVRNEARKNPENPSIELGPE
FKKVGDFLSRFKSIPSIIELDILKVVGDVWFGVGVTLKGKVTIKAVEKLEIPDGSNIENKDITGKGDL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G17310 AtUGP2, UGP2 UDP-glucose pyrophosphorylase ... Lus10020788
[exp]
0 1
AT3G55440 CYTOTPI, ATCTIM... CYTOSOLIC ISOFORM TRIOSE PHOSP... Lus10040807
[exp]
2.4 0.9119
AT1G70730 PGM2 phosphoglucomutase 2, Phosphog... Lus10021777
[exp]
5.3 0.9243
AT4G26270 PFK3 phosphofructokinase 3 (.1) Lus10011143
[exp]
5.6 0.9295
AT1G02090 ATCSN7, COP15, ... FUSCA 5, CONSTITUTIVE PHOTOMOR... Lus10004367
[exp]
7.5 0.8716
AT5G04830 Nuclear transport factor 2 (NT... Lus10008971
[exp]
7.7 0.8514
AT1G70730 PGM2 phosphoglucomutase 2, Phosphog... Lus10034595
[exp]
9.5 0.8888
AT4G11740 SAY1 Ubiquitin-like superfamily pro... Lus10029591
[exp]
11.0 0.8859
AT1G77760 GNR1, NIA1 nitrate reductase 1 (.1) Lus10038977
[exp]
11.3 0.8928
AT5G20070 ATNUDX19, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Lus10030056
[exp]
13.0 0.8417
AT1G21380 Target of Myb protein 1 (.1) Lus10042770
[exp]
13.9 0.8496

Lus10020788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.