Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58890 91 / 1e-20 MADS AGL82 AGAMOUS-like 82 (.1) AT5G55690 90 / 2e-20 MADS MADS-box transcription factor family protein (.1) AT3G18650 69 / 1e-12 MADS AGL103 AGAMOUS-like 103 (.1) AT4G11250 67 / 3e-12 MADS AGL52 AGAMOUS-like 52 (.1) AT5G65330 58 / 2e-09 MADS AGL78 AGAMOUS-like 78 (.1) AT1G65300 56 / 8e-09 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT3G05860 55 / 1e-08 MADS MADS-box transcription factor family protein (.1.2.3) AT1G65330 54 / 7e-08 MADS AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) AT5G26650 53 / 2e-07 MADS AGL36 AGAMOUS-like 36 (.1) AT5G27960 52 / 2e-07 MADS AGL90 AGAMOUS-like 90 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007371 [exp] 556 / 0 AT5G55690 100 / 1e-24 MADS-box transcription factor family protein (.1) Lus10014095 [exp] 178 / 3e-52 AT5G55690 87 / 3e-19 MADS-box transcription factor family protein (.1) Lus10019819 [exp] 174 / 8e-51 AT5G55690 83 / 7e-18 MADS-box transcription factor family protein (.1) Lus10012154 [exp] 55 / 1e-08 AT5G06500 65 / 7e-13 AGAMOUS-like 96 (.1) Lus10022316 [exp] 55 / 2e-08 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10014883 [exp] 53 / 1e-07 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10000974 [exp] 51 / 2e-07 AT5G26650 93 / 3e-24 AGAMOUS-like 36 (.1) Lus10041548 [exp] 46 / 8e-07 AT3G61120 92 / 6e-25 AGAMOUS-like 13 (.1) Lus10022325 [exp] 50 / 1e-06 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255700 [exp] 161 / 6e-46 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.012G109900 [exp] 157 / 2e-44 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 152 / 1e-42 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1) Potri.001G214900 [exp] 117 / 7e-30 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.013G107600 [exp] 58 / 5e-10 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.007G113800 [exp] 56 / 6e-09 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.006G201700 [exp] 54 / 7e-08 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.008G020300 [exp] 52 / 1e-07 AT3G18650 75 / 3e-15 AGAMOUS-like 103 (.1) Potri.005G002400 [exp] 52 / 2e-07 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.015G077800 [exp] 50 / 4e-07 AT4G02235 45 / 7e-06 AGAMOUS-like 51 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10020789 pacid=23140936 polypeptide=Lus10020789 locus=Lus10020789.g ID=Lus10020789.BGIv1.0 annot-version=v1.0 ATGGAGCTGATCAAGAACGAAAGAAACCGAAGCAACACTTACAAGAAAAGAAAGGCCAACTTGCTCAAGAAAATGGAAGAGTTCTCCATCCTCTGCGGCG TCGAAGCCTGTCTCGTCGTGTTCCAACCGCCGAACCTGACGGAGGACGGTGGAGATCAGCTACAGACGTGGCCTTCGGATCGCTATTCCGTCGACGCCAC GATCCAACGGTACAGAACGTCCGACGGCCCCAAGAGATGCTACCATCTATCGGATTACTTCGCGGAGAAGAAGAAAAGAGTCGGCGTCGAACTGTCCAAG ATCAACAAGCTCATTTACAGCCGCAAATTCCCCACCTGGGATGCTCGGATCGACCGGTTCTCGGCCGATCAGCTCAAGGCGCTGCTGGGGAAACTCGATT CGAAGATCGAGACCGCGGATCAGAAGCTTGAGTGTTTCAATCTAATACCTGAACATGATCAGTTTCTGGTTCCTGTCAGGAATTTTGAGCAATTCGGGTT AGCGTCGGATTATTATGGTAATGATTTCCAGCAGGTTTACTGTAATGACCAGAGCTTTCAGTTTGGTAATCATGATCAGGGTTCTTTCATGGCAATGTTG AATCCGAATTACTTCGGCAGCCTCTACTGGGATCAGGATAACAATTTCGGTTATTATGATGATCCGCCGGTTAATAACCTGGATAATATTGGTACCGAAT TGATTCTGAGTCCTGAAAAGATGAGGACGATCGATTTCGAGCCTTTTGGGCATCATCATCTGGCGAACCAATCGGAAGGCCAAATGGTCGCGGCCAAGGT CGAGAACGCAACGAGGAGATTCGGAGTGTATGGTGGTGAGCAGAGTATGGTGACGTCATCCTATGGTTCTTCTATGGAGTTTGGAGAGTACGGGATGATG AGTTACTCAGATGGGAGTTACATGAATTCAGGTCAAACAATTCAGGCGCCGGTGGAAATGCAATTCCAGATGTCGGGAGGTTCATATTTACAGAGGCAGT TTTCTCAGGAATTGGACGGCGGCGGACATCAGGCTTTTTCAGGATTTGAGAAGCTTCTAATTTGTCAGAGTGAATAA
AA sequence Show only first row Show all	>Lus10020789 pacid=23140936 polypeptide=Lus10020789 locus=Lus10020789.g ID=Lus10020789.BGIv1.0 annot-version=v1.0 MELIKNERNRSNTYKKRKANLLKKMEEFSILCGVEACLVVFQPPNLTEDGGDQLQTWPSDRYSVDATIQRYRTSDGPKRCYHLSDYFAEKKKRVGVELSK INKLIYSRKFPTWDARIDRFSADQLKALLGKLDSKIETADQKLECFNLIPEHDQFLVPVRNFEQFGLASDYYGNDFQQVYCNDQSFQFGNHDQGSFMAML NPNYFGSLYWDQDNNFGYYDDPPVNNLDNIGTELILSPEKMRTIDFEPFGHHHLANQSEGQMVAAKVENATRRFGVYGGEQSMVTSSYGSSMEFGEYGMM SYSDGSYMNSGQTIQAPVEMQFQMSGGSYLQRQFSQELDGGGHQAFSGFEKLLICQSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58890	MADS	AGL82	AGAMOUS-like 82 (.1)		Lus10020789 [exp]	0	1
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015645 [exp]	5.1	0.6665
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10042438 [exp]	6.2	0.6532
AT2G37890			Mitochondrial substrate carrie...		Lus10016523 [exp]	8.5	0.6642
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025913 [exp]	11.7	0.6398
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	12.3	0.6494
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	13.8	0.6494
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	15.1	0.6494
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	16.3	0.6494
AT2G15220			Plant basic secretory protein ...		Lus10019805 [exp]	17.7	0.6095
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	19.7	0.6296

Compare expression of checked genes

Lus10020789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.