Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73370 1200 / 0 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 1176 / 0 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT4G02280 935 / 0 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 908 / 0 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT3G43190 888 / 0 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G20830 882 / 0 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT1G04920 149 / 8e-37 ATSPS3F sucrose phosphate synthase 3F (.1) AT5G20280 137 / 8e-33 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) AT5G11110 136 / 1e-32 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT4G10120 135 / 2e-32 ATSPS4F Sucrose-phosphate synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007372 [exp] 1676 / 0 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10041979 [exp] 1163 / 0 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 1094 / 0 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10001468 [exp] 915 / 0 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10020506 [exp] 907 / 0 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10012454 [exp] 871 / 0 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10010308 [exp] 849 / 0 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10013417 [exp] 489 / 5e-162 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10008205 [exp] 343 / 4e-111 AT4G02280 466 / 2e-159 sucrose synthase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G139100 [exp] 1361 / 0 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.004G081300 [exp] 1343 / 0 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.015G029100 [exp] 1251 / 0 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 1248 / 0 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.002G202300 [exp] 936 / 0 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.018G063500 [exp] 911 / 0 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.006G136700 [exp] 904 / 0 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.006G064300 [exp] 145 / 2e-35 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G025100 [exp] 143 / 7e-35 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.013G095500 [exp] 142 / 1e-34 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF00862 [flax] [poplar] Sucrose_synth Sucrose synthase
Representative CDS sequence Show only first row Show all	>Lus10020791 pacid=23140810 polypeptide=Lus10020791 locus=Lus10020791.g ID=Lus10020791.BGIv1.0 annot-version=v1.0 ATGGCGAGCTTGAAGAGGTCGGATTCAATAGCTGACAACATGCCGGAGGCCCTGAGGCAGAGCAGGTACCACATGAAGAAGTGCTTCGCTACGTACGTTT CGAAAGGCAGGCGGATCATGAAGCTTCAGCAACTCCTCGACGAGATGGAGAATGTCATCGATGATATCCCCGAACGCAGGCGCCTCTTCGAGGGCCTACT CGGCGACATCTGGCACTCCACTCAGGAAGCTGTTGTGAACCCACCTTATGTGGCGTTTGCTATCAGGCCAAGTCCCGGATTCTGGGAGTACGTGAAGGTC AGCTCTCAGGATCTGTCGGTCGAAGGCATCACTTCGACCGAATACCTCAAGTACAAGGAGTTGATCTACGACCAGAATTGGTCGGATGATGAGCAGGCAC TGGAGCTGGATTTCGGAGCTTTTGAACCTTCTGTGCCACACTTGACACTTTCATCTTCCATTGGGAATGGGATGAATTTTGTGTCCAAGTTCATTACTTC CAAGCTCAGTGGGAAGCCTGAGAATGTTCAGCCTCTGGTGGATTACTTGCTTTCCCTCAATCATCACGGAGAAAATCTGATGATAAATGAGGCCCTGAGC ACAGCTTCAAAGCTCCAGATGGCACTCATTGTTGCAGATGTTCACCTGTCAGGATTCCCCGAGGACACCCCTTGCGAAAAATTCGAGCTGAGCTTGAAGG AGTGGGGGATGGAGAGAGGATGGGGAGACACGGCGAAGACAGTGAAGGAAACGATGAGATACCTCTCTGAAGTGATGCAAGCGCCCGACCCGATCAACAT GGAGAGATTCTTCAGCAGGATTCCGACAGTGTTCAACATCGTCGTGTTCTCCCCTCACGGTTACTTTGGACAGGCCGACGTTCTTGGCCTGCCCGACACT GGAGGCCAGGTAGTATACATCCTGGACCAAGTCAAAGCACTTGAGGAAGAGCTCCTCATCCGCATTTCCCAACAAGGACTCCTCCATTTCAAGCCTCAAA TCCTTGTCGTGACAAGGCTTATCCCGGATGCCAAGGGAACCAAATGCAACCAGGAATTGGAGAGCATCAATGGAACTAAGTACTCCAGCATTCTTCGTGT CCCATTTCGCCTTGATGATGGCACCGTGCTGAAACAATGGGTCTCTCGATTCGATGTCTACCCTTACCTCGAGAGGTTCACTCGGGAAGTTACGACGAAA GTTGTGGATCTGATGGAAGGGAAGCCGGACCTCATCGTGGGTAACTATACTGATGGGAACTTGTGCGCGACGTTAATGGCTAATAAACTTGGTGTAACAC AGGCAACGATTGCGCATGCATTGGAGAAAACCAAGTACGAGGATTCAGACATCAAGTGGAAGGAATCGGAACCCAAATACCATTTCTCCTGCCAGTTCAC TGCTGATATGATTGCTATGAACTCTGCAGACTTCATCATTGCCAGCACTTACCAAGAGATTGCTGGAAGCAAAGAGAGACCGGGTCAGTACGAATCCCAC GGAGCGTTCACAATGCCTGGTCTGGCTCGAGTTGTGTCCGGTATCAACATTTTCGATCCGAAGTTCAACATCGCTTCGCCTGGAGCTGACCAATCCTTCT ACTTCCCTTACACTGATAAACAGAGACGCTTCACTGAGTTCCATCCCGCCATTGAAGAACTTCTCTTCAGCAACAAGGATTCTCGAGACCACATTGGGTT CTTAGCAGACAAAAAGAAACCGATGATCTTCACAATGGCAAGACTAGACACAGTGAAGAACATCACAGGACTAACGGAATGGTACGGCAAAAGCAAGAGG CTAAGAAGCTTGGTCAACTTAGTGATTGTAGGAGGCTTCTTCGACCCGAACGAGTCCAAGGACAGAGAGGAAATGGCCGAGATTAAAAAGATGCACCTCT TGATCGACAAGTACAACCTCAAGGGTCAGATCAGATGGATAAGAGCGCAGACCGATCGGAGGAGAAACGGAGAGCTCTACCGATACATTGCAGATTCGAA AGGTGCATTCGTGCAGCCCGCCCTTTACGAGGCGTTCGGGCTAACGGTGATTGAGGCCATGAACTGTGGACTGCCTAACTTTGTGACCAACCAAGGTGGC CCTGCTGAGATTGTTGTGGATGGAGTTTCCGGGTTTCATATCGATCCGAATAACGGGGATGAGGCAAGTAAGAAGATGGTTGAGTTTTTCGAGAAGTGTA AGGCGGATTCTGGTTACTGGCATAAGGTTTCTGTTGCTGGATTGGCTCGTATCGAGGAATGTTACACATGGAGGATATATGCAAACAAGATGTTGAACAT GGGAAGCATGTTCACGTTCTGGAGAATGCTGCACAAGGATCAGAAGCTGGCGAAACAGAGATACATTCAGCTGTTGTATAATCTACAGTTCAAGAATCTG GCAAAGAATGTGAAGATGCCAAAGGAAGAAGCAGAACAAGAGAAGCCAGTTCCTAGAGCAGCTTCCCCTACTAAGATGTAA
AA sequence Show only first row Show all	>Lus10020791 pacid=23140810 polypeptide=Lus10020791 locus=Lus10020791.g ID=Lus10020791.BGIv1.0 annot-version=v1.0 MASLKRSDSIADNMPEALRQSRYHMKKCFATYVSKGRRIMKLQQLLDEMENVIDDIPERRRLFEGLLGDIWHSTQEAVVNPPYVAFAIRPSPGFWEYVKV SSQDLSVEGITSTEYLKYKELIYDQNWSDDEQALELDFGAFEPSVPHLTLSSSIGNGMNFVSKFITSKLSGKPENVQPLVDYLLSLNHHGENLMINEALS TASKLQMALIVADVHLSGFPEDTPCEKFELSLKEWGMERGWGDTAKTVKETMRYLSEVMQAPDPINMERFFSRIPTVFNIVVFSPHGYFGQADVLGLPDT GGQVVYILDQVKALEEELLIRISQQGLLHFKPQILVVTRLIPDAKGTKCNQELESINGTKYSSILRVPFRLDDGTVLKQWVSRFDVYPYLERFTREVTTK VVDLMEGKPDLIVGNYTDGNLCATLMANKLGVTQATIAHALEKTKYEDSDIKWKESEPKYHFSCQFTADMIAMNSADFIIASTYQEIAGSKERPGQYESH GAFTMPGLARVVSGINIFDPKFNIASPGADQSFYFPYTDKQRRFTEFHPAIEELLFSNKDSRDHIGFLADKKKPMIFTMARLDTVKNITGLTEWYGKSKR LRSLVNLVIVGGFFDPNESKDREEMAEIKKMHLLIDKYNLKGQIRWIRAQTDRRRNGELYRYIADSKGAFVQPALYEAFGLTVIEAMNCGLPNFVTNQGG PAEIVVDGVSGFHIDPNNGDEASKKMVEFFEKCKADSGYWHKVSVAGLARIEECYTWRIYANKMLNMGSMFTFWRMLHKDQKLAKQRYIQLLYNLQFKNL AKNVKMPKEEAEQEKPVPRAASPTKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020791 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10007722 [exp]	3.5	0.7409
AT1G80780			Polynucleotidyl transferase, r...		Lus10032797 [exp]	7.2	0.6902
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022304 [exp]	11.0	0.8299
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	14.8	0.7842
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029673 [exp]	21.8	0.7718
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10007372 [exp]	25.7	0.7304
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10041979 [exp]	26.1	0.7746
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	27.5	0.7672
AT3G18670			Ankyrin repeat family protein ...		Lus10027721 [exp]	30.0	0.7620
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022305 [exp]	33.7	0.7588

Compare expression of checked genes

Lus10020791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.