Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65820 218 / 3e-74 microsomal glutathione s-transferase, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007375 [exp] 284 / 4e-100 AT1G65820 222 / 7e-76 microsomal glutathione s-transferase, putative (.1.2.3) Lus10007373 [exp] 246 / 3e-85 AT1G65820 207 / 5e-70 microsomal glutathione s-transferase, putative (.1.2.3) Lus10020792 [exp] 186 / 2e-61 AT1G65820 171 / 1e-55 microsomal glutathione s-transferase, putative (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G140900 [exp] 222 / 2e-75 AT1G65820 217 / 1e-73 microsomal glutathione s-transferase, putative (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01124 [flax] [poplar] MAPEG MAPEG family
Representative CDS sequence Show only first row Show all	>Lus10020793 pacid=23140797 polypeptide=Lus10020793 locus=Lus10020793.g ID=Lus10020793.BGIv1.0 annot-version=v1.0 ATGGCGGCCGTCGGAGTTGCAGAATTGCTACCCAAGGAGTACGGCTACGTGGCTCTGGTACTAGTGGCCTACTGCTTTCTGAATATATTCATGGCATTCA AGGTCGGGCAGGCTCGCAGGAAGTACAAAGTCCCTTATCCCACTCTCTACGCCATTGAATCTGAGAACAAAGAAGCTAAACTCTTCAACTGCGTTCAGAG AGGGCACCAGAACTCGCTGGAGTTCATGCCGATGTTCTTTATGCTGTTGGCGCTGGGAGGACTGAGGCATCCCTGCGTGGCCGCCGTTCTCGGCGCTTTC TTTACCGTTACTCGCTACTTCTATTTCACCGGCTACTCCACCGGCGATCCCAAAAACCGCCTCACCATCGGTAAGTACGGGTTCTTGTTCATCTTTGGGC TAATGGGCTGCACAATTTCCCTTGGCATCACCCTCCTCCTACGGGCATAG
AA sequence Show only first row Show all	>Lus10020793 pacid=23140797 polypeptide=Lus10020793 locus=Lus10020793.g ID=Lus10020793.BGIv1.0 annot-version=v1.0 MAAVGVAELLPKEYGYVALVLVAYCFLNIFMAFKVGQARRKYKVPYPTLYAIESENKEAKLFNCVQRGHQNSLEFMPMFFMLLALGGLRHPCVAAVLGAF FTVTRYFYFTGYSTGDPKNRLTIGKYGFLFIFGLMGCTISLGITLLLRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	0	1
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	2.2	0.9560
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	4.2	0.9440
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	4.5	0.9448
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001274 [exp]	4.9	0.9318
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10014831 [exp]	6.0	0.9339
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042487 [exp]	7.9	0.9209
AT1G78780			pathogenesis-related family pr...		Lus10042792 [exp]	9.2	0.9335
AT4G39230			NmrA-like negative transcripti...		Lus10042312 [exp]	12.2	0.8928
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10019808 [exp]	12.6	0.9197
AT4G13180			NAD(P)-binding Rossmann-fold s...		Lus10010673 [exp]	15.4	0.9277

Compare expression of checked genes

Lus10020793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.