Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65910 411 / 2e-132 NAC ANAC028 NAC domain containing protein 28 (.1) AT4G31700 389 / 3e-129 RPS6A, RPS6 ribosomal protein S6 (.1.2) AT5G10360 387 / 1e-128 RPS6B, EMB3010 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) AT5G17260 302 / 4e-93 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G03200 299 / 8e-92 NAC ANAC045 NAC domain containing protein 45 (.1) AT3G17730 286 / 6e-90 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G54330 260 / 2e-79 NAC ANAC020 NAC domain containing protein 20 (.1) AT5G46590 226 / 4e-67 NAC ANAC096 NAC domain containing protein 96 (.1) AT4G17980 221 / 7e-66 NAC ANAC071 NAC domain containing protein 71 (.1) AT1G32510 208 / 1e-60 NAC ANAC011 NAC domain containing protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007377 [exp] 1050 / 0 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10010959 [exp] 543 / 0 AT1G65910 389 / 9e-128 NAC domain containing protein 28 (.1) Lus10007376 [exp] 427 / 3e-144 AT5G10360 451 / 3e-163 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10031021 [exp] 427 / 7e-144 AT5G10360 448 / 4e-162 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10027260 [exp] 426 / 1e-143 AT5G10360 448 / 8e-162 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10035414 [exp] 427 / 2e-143 AT5G10360 446 / 5e-160 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10042284 [exp] 283 / 4e-88 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 283 / 4e-88 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10035373 [exp] 231 / 3e-68 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G081000 [exp] 507 / 1e-168 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.017G139500 [exp] 504 / 8e-168 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.005G072700 [exp] 409 / 4e-137 AT5G10360 416 / 2e-149 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.001G311000 [exp] 408 / 8e-137 AT5G10360 421 / 3e-151 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.005G162600 [exp] 407 / 2e-136 AT5G10360 419 / 1e-150 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.007G096300 [exp] 407 / 3e-136 AT5G10360 417 / 2e-149 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.002G099500 [exp] 398 / 5e-133 AT5G10360 413 / 6e-148 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.010G174600 [exp] 291 / 1e-90 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.008G081500 [exp] 286 / 5e-89 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.015G030200 [exp] 276 / 1e-86 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein PF01092 [flax] [poplar] Ribosomal_S6e Ribosomal protein S6e
Representative CDS sequence Show only first row Show all	>Lus10020794 pacid=23140889 polypeptide=Lus10020794 locus=Lus10020794.g ID=Lus10020794.BGIv1.0 annot-version=v1.0 ATGGCTCCTGTTTCATTGCCACCTGGATTCCGGTTCCACCCCACGGACGAGGAGCTGGTTGCTTACTACTTGAAGAGCAAGATCAACGGCCAGAAGATCG AGCTCGAGATCATCCCTGAAGTCGATCTTTACAAGTGCGAGCCCTGGGATTTGCCTGGAAAATCCCTGCTCCCTAGCAAAGATATGGAGTGGTACTTCTT CAGCCCGCGAGATCGCAAGTATCCGAACGGGTCCAGAACGAACCGAGCCACGAAAACCGGGTACTGGAAGGCTACGGGGAAGGACCGCAAAGTAAACTCC CAGACGCGTTCTGTAGGGATGAAGAAAACCCTAGTCTACTACCGTGGACGTGCACCTCACGGTGCTCGCTCCGATTGGGTCATGCATGAGTATCGCCTCG ACGATCGAGAATGCGACTCCCCAGCTTCTGGCTTACAGGATGCGTATGCATTGTGCCGGGTGTTTAAGAAGACGGCGGCGCCAACGCCGCCGAAGGTCCA CGTGGAGGGCTACTCATCTCCAATGAACAATCATATGCATAATCATCATCCGAGTCAGCTCCAGGTGGCGAGTCAGCATAACAATGAGCGTTCTTCCAGC AGTACTGTGTATTCTGACGGTGGCAGCCCGAGCTACGCAGCTAATTTCGGCAATGGTGCTTACGTGGACACTTGCTCTCAAGCAAATGCTGGTTTTAATA GAGTCAATGACAGCGTCGTTGACAATCGTGGCACTACGTGGACGATTGGCGCCACATCATCGTCGTCCATGCATCCATTCAGCTTCCAACCTACTCCTTT TCCTTCGCCGTGTTATGGATCGTCTTCCATTCCTAATTACCCTCCTTCCAAGGTTGATATAGCGTTGGAATGTGCGAGGCTTCAACACAGATTCACTCTG CCGCCACTGGAAGTCGAAGACTACCCCAACAAACGAATGATGTCGACGATGATGATGAACGACAGCTCGAGCAGTCACCATCATAACAACAATCAGGGCT CAGACCTTCTGCAGGAGATTCTTTCGGTAGCCCATGCATCACAGGAACTCATAAACAACAATAACAACGATCAGTACAATAGTTTCCAAGCAGCTGGGTT CGGCAGCGGTGCTAACGACTTCTCCGCCGTTGCTGATAACAACGACTTCACTTTCACGTCCTCCTCAGCAGCTGGGAATAATATGTCTATCAGCTCAAAC GACATGTCGTCTTCATGGTTAGACAATTCCAGGTCTGTAGATATTGGAGACGACGTCGTAGATGGCCAGTTCATGAGGTCGGATCGGATGGTGGAGAACT TGAGGTGGCTCGGCATGTCTAACGACGAACTGCAGCAGAGCTTTATGAATGAGCACAAGATCGTTCCAATAGCCAGCATTTCAAGCTTCACGTCAATGAA CACCCACAGTGATCAAGTTGAAGCTGGAGCAGATAACCAACTAGATCATAACGACGGCCTAGGGTTCATCAACGACAGCGACGACGTTTACAACTCCCTA GAATTCATCGTCGACGACGAGCCCTCCGCCAACGCCCAGGACGACGTCGTAGCAAGCTCCCCGAGCTTCGAGGTGGTTCACGAGGAAGTCAGAGTCAACC AGGGGCTTTTCATTTCCACGCGCCAGGCTGCCGACACTTTTTTCCACCAGTTAGTGCCATCCCAGACCGTTAAAGTCCAGCTCAACCAATCTGCCTCCGC CGTCCATCCCCATCAATTCTTCACCGTCAAGAAGAAACAACGTCCGACGAGCACTATGGTCAATAGTTATGGTACTGGAGTGATCAACCTTGTGAGTTTG ATCATTGTGGCTCTCTTAATGCATTGCTTGAGTCTCAAGGAAGACAAGTTTGATGGGAGTAGTGCTGTTAAATCGCCGGTGATTAGCATCCACCGTGGCG GTGGTGATCGGAAGGGGTCGAAGTCGGTTGGAGTGGTGCTGAAGAAGTTTGGGATATTGCTAACGATTTCTTTTGCGCTGTGGACAATGTTGTTCAACAT CGCCAACCCCACAACGGGGTGCCAGAAGAAGCTGGAGATCGACGACGACCAGAAGCTGCGTGCCTTCTTTGACAAGAGGATCTCCCAGGAAGTCAGTGGT GATGCTCTTGGAGAGGAATTTAAGGGATATGTATTCAAGATCATGGGAGGATGCGACAAGCAGGGCTTCCCCATGAAGCAAGGAGTTCTGAATCCTGGCC GTGTCCGCCTTTTGCTCACTCGAGGAACCCCGTGCTTCCGTGGATATGGAAGACGCAACGGTGAGCGAAGAAGGAAGTCTGTGCGAGGTTGCATCGTCAG CCAGGACCTGTCTGTTCTCAACTTGGTCATCGTGAAGAAAGGCGACAATGATCTCCCCGGACTGACCGACACCGAGAAACCAAGAATGAGAGGACCCAAG AGGGCATCCAAGATCCGCAAGCTCTTCAATCTCTCGAAAGAGGATGATGTGAGGAAGTACGTTAACACCTACAGAAGAACCTTCACTGCGAAGAATGGAA AGGAAGTGAGCAAGGCTCCTAAGATTCAGAGGTTGGTAACTCCCGTGACTCTGCAAAGGAAGAGGGCAAGGCTTGCCGAGAAGAAGAGGAGGGTTGAGAA GGCAAACTCTGAAGCTGCCGAGTACCAGAAGCTGCTTGCTTCAAGACTGAAAGAGCAGAGGGAGCGCCGCAGTGAGAGCTTAGCCAAGAAGAGGTCCAGG TTGTCGACTGCTTCCAAGCCATCCGTTGTCGCTTAA
AA sequence Show only first row Show all	>Lus10020794 pacid=23140889 polypeptide=Lus10020794 locus=Lus10020794.g ID=Lus10020794.BGIv1.0 annot-version=v1.0 MAPVSLPPGFRFHPTDEELVAYYLKSKINGQKIELEIIPEVDLYKCEPWDLPGKSLLPSKDMEWYFFSPRDRKYPNGSRTNRATKTGYWKATGKDRKVNS QTRSVGMKKTLVYYRGRAPHGARSDWVMHEYRLDDRECDSPASGLQDAYALCRVFKKTAAPTPPKVHVEGYSSPMNNHMHNHHPSQLQVASQHNNERSSS STVYSDGGSPSYAANFGNGAYVDTCSQANAGFNRVNDSVVDNRGTTWTIGATSSSSMHPFSFQPTPFPSPCYGSSSIPNYPPSKVDIALECARLQHRFTL PPLEVEDYPNKRMMSTMMMNDSSSSHHHNNNQGSDLLQEILSVAHASQELINNNNNDQYNSFQAAGFGSGANDFSAVADNNDFTFTSSSAAGNNMSISSN DMSSSWLDNSRSVDIGDDVVDGQFMRSDRMVENLRWLGMSNDELQQSFMNEHKIVPIASISSFTSMNTHSDQVEAGADNQLDHNDGLGFINDSDDVYNSL EFIVDDEPSANAQDDVVASSPSFEVVHEEVRVNQGLFISTRQAADTFFHQLVPSQTVKVQLNQSASAVHPHQFFTVKKKQRPTSTMVNSYGTGVINLVSL IIVALLMHCLSLKEDKFDGSSAVKSPVISIHRGGGDRKGSKSVGVVLKKFGILLTISFALWTMLFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSG DALGEEFKGYVFKIMGGCDKQGFPMKQGVLNPGRVRLLLTRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLNLVIVKKGDNDLPGLTDTEKPRMRGPK RASKIRKLFNLSKEDDVRKYVNTYRRTFTAKNGKEVSKAPKIQRLVTPVTLQRKRARLAEKKRRVEKANSEAAEYQKLLASRLKEQRERRSESLAKKRSR LSTASKPSVVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10020794 [exp]	0	1
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	1.4	0.9468
AT5G48760			Ribosomal protein L13 family p...		Lus10011857 [exp]	3.0	0.9403
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	3.2	0.9420
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10007056 [exp]	3.9	0.9119
AT3G12150			unknown protein		Lus10035501 [exp]	4.7	0.8880
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	5.3	0.9364
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Lus10006181 [exp]	5.3	0.8805
AT3G02080			Ribosomal protein S19e family ...		Lus10013188 [exp]	6.0	0.9100
AT3G02080			Ribosomal protein S19e family ...		Lus10030702 [exp]	7.2	0.8987
AT5G60670			Ribosomal protein L11 family p...		Lus10023186 [exp]	8.4	0.9012

Compare expression of checked genes

Lus10020794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.