Plant FIBer expression Database

Lus10020795 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65720 103 / 2e-27 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031363
[exp]
237 / 1e-79 AT1G65720 112 / 5e-31 unknown protein
Lus10010961
[exp]
184 / 1e-58 AT1G65720 82 / 2e-19 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G142100
[exp]
114 / 2e-31 AT1G65720 88 / 5e-22 unknown protein
Potri.004G078500
[exp]
110 / 3e-30 AT1G65720 86 / 3e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10020795 pacid=23140815 polypeptide=Lus10020795 locus=Lus10020795.g ID=Lus10020795.BGIv1.0 annot-version=v1.0
ATGGCGTCGACTTCGAGGCAGCTTCCGGTCGCCGACCACCTCCTCCTCCTCGCCGTCCTGATCGGATTCCTTTCCGTCTCCGTCTCGGTCTCCGCCGGTA
GGCCCTGCAAGACTCTCTACATTTCCTCCTACACCGTATCAGTCAGGCCTCTTCACTCCTTCCGCTTTCCTAACCCTAGTTTAGGCCGTCGCTCCGCTGG
ATTCGTGGCGATCGTCACTGAAATCGGTCACCAGAGCTCCTCGGATTCATCGTCCGACATGATCGTCGATCGCTCGGTTTTCCCCGGCCTCGAATTCCAC
CGTGATGCTGATGCAGGGTCGGGATTCGTCCACCACCGTCGGGAGGAGCAGCAGCAAGGCTTCGCTCGACTTCTTCCCTTCGGTATGTCGTCCCACGACA
TTAGCTCGCTCCGAGACCGTACTAAGGACATTCTCAGCGTGGTTGTGGCTTTGCTCTTTGGCGTTGGATGTGGAGCTCTCACTGCAGCCAGCATGTACCT
CGTCTGGTCTCTCTTTGCCGCTCGATCTGGTGACTACTACTACGAATCGGACTACGACGAGGATGAGGAAGAGGATGCCTCGCCTAAGAAGAGTGGCTAT
CTCGCGATTCCGGAAGCAGAGTGGCTATGTCGCGATTCCGGAAGCTGA
AA sequence
>Lus10020795 pacid=23140815 polypeptide=Lus10020795 locus=Lus10020795.g ID=Lus10020795.BGIv1.0 annot-version=v1.0
MASTSRQLPVADHLLLLAVLIGFLSVSVSVSAGRPCKTLYISSYTVSVRPLHSFRFPNPSLGRRSAGFVAIVTEIGHQSSSDSSSDMIVDRSVFPGLEFH
RDADAGSGFVHHRREEQQQGFARLLPFGMSSHDISSLRDRTKDILSVVVALLFGVGCGALTAASMYLVWSLFAARSGDYYYESDYDEDEEEDASPKKSGY
LAIPEAEWLCRDSGS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G65720 unknown protein Lus10020795
[exp]
0 1
AT4G10810 unknown protein Lus10023038
[exp]
4.8 0.8459
AT1G13930 unknown protein Lus10036965
[exp]
7.3 0.7700
AT4G40045 unknown protein Lus10034155
[exp]
10.2 0.7672
AT1G53900 Eukaryotic translation initiat... Lus10037452
[exp]
11.6 0.7381
AT3G13677 unknown protein Lus10015813
[exp]
13.7 0.7496
AT1G16840 unknown protein Lus10035733
[exp]
17.9 0.7627
AT5G20650 COPT5 copper transporter 5 (.1) Lus10022671
[exp]
18.3 0.7689
AT5G28040 GeBP DNA-binding storekeeper protei... Lus10015944
[exp]
18.9 0.7844
AT5G11770 NADH-ubiquinone oxidoreductase... Lus10014530
[exp]
21.2 0.7533
AT3G09770 LOG2 LOSS OF GDU 2, RING/U-box supe... Lus10023182
[exp]
23.3 0.7693

Lus10020795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.