Plant FIBer expression Database

Lus10020796 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G43110 79 / 3e-18 unknown protein
AT5G20790 78 / 9e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007378
[exp]
343 / 1e-121 AT5G20790 91 / 1e-22 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G137700
[exp]
105 / 3e-28 AT5G20790 71 / 1e-15 unknown protein
PFAM info
Representative CDS sequence
>Lus10020796 pacid=23140851 polypeptide=Lus10020796 locus=Lus10020796.g ID=Lus10020796.BGIv1.0 annot-version=v1.0
ATGAATTCTGTAGATCACTCGGCTCTAGACCCGCTGGTGTTCGATTACATCACCTGCGGCATCTCCGACATCGTCAACAACCTCTGGACCTGGGTCGCCC
TTCTCACCGCTGCCGTCAGCTTCTGGACGACCATCAGAGCCGCCTCCGCCGTCGCAGCTGTAGATGACGAAGGTCCCTCGACGTCATCGTATCCTCGCTC
TTCGCTTCGACGTCTCAAAATCCAGGTCCCGAAATCTGGTTTTGTCCTTCGCCGGGATATCATTTCGGCTTTAACTCCACCGTCGGTGGAGTTGGTTCCG
GTGGTGGATACTCCGAAGACCCCCGCTTCGAGTCCGATCGTCTCCGACGATGACGGCTTGACGACCAAGGGGAAGTTCGTGACGTATTATCGGGAAATTG
AGGAGGAGGTGGTGGAGGAGGAGAGATGTGAAGACGGCATGGAAAACGACGTCGTCGGCGGGAATGGGTTGTGGGAGGCGGAGTTGAGGCTGAAAATGAG
AGAGGAAATGGGATGGTATCGGTACCAGGATTTGACGGCGATTAACGGGAATGTGGTTAGGTTGTGGGACGGCGTTAGGAATGGAGACGGAGAGTGCAGC
TACAGAAACCCCATCTGTACTAGTTTAGCAATTTGGTAG
AA sequence
>Lus10020796 pacid=23140851 polypeptide=Lus10020796 locus=Lus10020796.g ID=Lus10020796.BGIv1.0 annot-version=v1.0
MNSVDHSALDPLVFDYITCGISDIVNNLWTWVALLTAAVSFWTTIRAASAVAAVDDEGPSTSSYPRSSLRRLKIQVPKSGFVLRRDIISALTPPSVELVP
VVDTPKTPASSPIVSDDDGLTTKGKFVTYYREIEEEVVEEERCEDGMENDVVGGNGLWEAELRLKMREEMGWYRYQDLTAINGNVVRLWDGVRNGDGECS
YRNPICTSLAIW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G43110 unknown protein Lus10020796
[exp]
0 1
AT5G20150 ATSPX1 ARABIDOPSIS THALIANA SPX DOMA... Lus10019415
[exp]
1.7 0.9491
AT5G20790 unknown protein Lus10007378
[exp]
2.0 0.9319
AT5G20150 ATSPX1 ARABIDOPSIS THALIANA SPX DOMA... Lus10030095
[exp]
3.0 0.9324
AT5G20150 ATSPX1 ARABIDOPSIS THALIANA SPX DOMA... Lus10043272
[exp]
3.2 0.9391
AT1G17710 AtPEPC1 Arabidopsis thaliana phosphoet... Lus10001479
[exp]
3.2 0.8599
AT3G19660 unknown protein Lus10033765
[exp]
3.5 0.8990
AT3G47420 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease ... Lus10031153
[exp]
5.0 0.9200
AT5G20410 ATMGD2, MGD2 ARABIDOPSIS THALIANA MONOGALAC... Lus10016359
[exp]
6.3 0.8946
AT2G35840 Sucrose-6F-phosphate phosphohy... Lus10015995
[exp]
6.7 0.7978
AT5G54770 THI4, TZ, THI1 THIAZOLE REQUIRING, THIAMINE4,... Lus10018364
[exp]
7.9 0.8986

Lus10020796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.