Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20230 231 / 9e-78 Ribosomal L18p/L5e family protein (.1) AT1G08845 111 / 8e-31 Ribosomal L18p/L5e family protein (.1.2) AT5G27820 73 / 9e-17 Ribosomal L18p/L5e family protein (.1) AT3G22450 72 / 5e-15 Ribosomal L18p/L5e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007379 [exp] 351 / 5e-125 AT3G20230 234 / 3e-79 Ribosomal L18p/L5e family protein (.1) Lus10001727 [exp] 116 / 2e-32 AT1G08845 268 / 1e-92 Ribosomal L18p/L5e family protein (.1.2) Lus10004129 [exp] 114 / 3e-29 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10006115 [exp] 88 / 2e-20 AT3G22450 231 / 6e-74 Ribosomal L18p/L5e family protein (.1) Lus10010558 [exp] 87 / 3e-20 AT3G22450 238 / 8e-77 Ribosomal L18p/L5e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G108700 [exp] 259 / 6e-89 AT3G20230 226 / 6e-76 Ribosomal L18p/L5e family protein (.1) Potri.019G081000 [exp] 258 / 5e-88 AT3G20230 249 / 4e-85 Ribosomal L18p/L5e family protein (.1) Potri.013G029300 [exp] 118 / 1e-33 AT1G08845 295 / 1e-102 Ribosomal L18p/L5e family protein (.1.2) Potri.008G153100 [exp] 91 / 2e-21 AT3G22450 253 / 2e-82 Ribosomal L18p/L5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF00861 [flax] [poplar] Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Representative CDS sequence Show only first row Show all	>Lus10020797 pacid=23140958 polypeptide=Lus10020797 locus=Lus10020797.g ID=Lus10020797.BGIv1.0 annot-version=v1.0 ATGTCGTGTGTAATCTCTGCCTCTCCGGCCCTGCCGCCGGCAGTGGTATCTTCTGACTCTTCGCCGCTGCATACCTCCGCTCGCCAGCTCACACCCATTT CCCTCTCCTTGGTTTCTCATTTCCCCAGTCTTATCGTCTCCCTCAACAACTACAATTCACTCTCTAATTGTTCCCCTCTTTCCACAAACAAGAATTCGTC CAGTCTTTTCGTTCCATCTGCCTGGACCAGGAGATCTCGCGGGGAGCTCAATAAGCAACCAAACAGCAGCAGAAAGTCATGGAAACAGAGGACGGACATG TACATGAGGCCTTTCTTGCTAAACGTCTTCTTTTCGAAGAGATTCGTCCACGCAAAAGTGATGCACCGCGGGACTAGCAAAGTTATATCTGTTGCTACCA CAAACGCCAGGGATCTTAGGAACAGCCTACCCTCCCTCACAGATAATAATGCCTGTAGACTTATCGGTCAGCTTATAGCAGAGAGATCCAAAGAAGCAGA TGTATACGCACTGTCGTACGAGCCAAGAAAGAACGAGAGAATCGAAGGTAAGCTTGGGATCGTCATCGACACCATAAAAGAGAACGGTATCATCTTTGTA GATTGA
AA sequence Show only first row Show all	>Lus10020797 pacid=23140958 polypeptide=Lus10020797 locus=Lus10020797.g ID=Lus10020797.BGIv1.0 annot-version=v1.0 MSCVISASPALPPAVVSSDSSPLHTSARQLTPISLSLVSHFPSLIVSLNNYNSLSNCSPLSTNKNSSSLFVPSAWTRRSRGELNKQPNSSRKSWKQRTDM YMRPFLLNVFFSKRFVHAKVMHRGTSKVISVATTNARDLRNSLPSLTDNNACRLIGQLIAERSKEADVYALSYEPRKNERIEGKLGIVIDTIKENGIIFV D

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10020797 [exp]	0	1
AT3G06730		TRXz, TRXP ,TRX...	thioredoxin putative plastidic...		Lus10039499 [exp]	1.4	0.9467
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10030535 [exp]	1.7	0.9257
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10007379 [exp]	2.8	0.9300
AT1G10522			unknown protein		Lus10030655 [exp]	8.1	0.9185
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10038523 [exp]	9.5	0.9097
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10010145 [exp]	10.2	0.9205
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10035678 [exp]	10.7	0.9199
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Lus10011014 [exp]	12.8	0.9011
AT3G12930			Lojap-related protein (.1)		Lus10002544 [exp]	13.1	0.9100
AT1G06190			Rho termination factor (.1.2)		Lus10022920 [exp]	15.1	0.9040

Compare expression of checked genes

Lus10020797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.