Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65930 745 / 0 cICDH cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) AT1G54340 697 / 0 ICDH isocitrate dehydrogenase (.1) AT5G14590 668 / 0 Isocitrate/isopropylmalate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007380 [exp] 830 / 0 AT1G65930 741 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10010431 [exp] 707 / 0 AT1G54340 747 / 0.0 isocitrate dehydrogenase (.1) Lus10012111 [exp] 704 / 0 AT1G54340 746 / 0.0 isocitrate dehydrogenase (.1) Lus10022252 [exp] 590 / 0 AT5G14590 714 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Lus10013090 [exp] 481 / 5e-168 AT5G14590 578 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G074900 [exp] 762 / 0 AT1G65930 781 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.017G144541 [exp] 750 / 0 AT1G65930 779 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.010G176000 [exp] 719 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.008G080500 [exp] 716 / 0 AT1G65930 734 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.001G347800 [exp] 667 / 0 AT5G14590 771 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10020798 pacid=23140857 polypeptide=Lus10020798 locus=Lus10020798.g ID=Lus10020798.BGIv1.0 annot-version=v1.0 ATGGCTTTCGAGAAGATCAAGGTCACTAACCCCATCGTCGAGATGGACGGAGATGAAATGACCCGAGTTATATGGCAATCAATTAAGGATAAGCTTATCC TCCCATTTGTGGAGTTGGACATCAAGTACTTTGACCTTGGCCTTCCTCATCGTGATGCTACCGATGATAAAGTTACAGTTGAAAGTGCAGAAGCTACTCT GAAGTATAATGTAGCAATCAAGTGTGCTACAATTACTCCAGATGAAGCTCGAGTCAAGGAGTTCAACTTGAAACAAATGTGGATTAGTCCAAATGGGACA ATCAGGAATATTTTGAATGGTACTGTGTTTAGAGAACCAATTCTTTGTAAAAATGTCCCCCGTCTTGTTCCAGGTTGGACAAAGCCAATTTGCATTGGCA GACATGCTTTTGGCGATCAATATAAGGCAAAAGACACTGTCATTAAAGGGAAGGGCAAACTCAAATTGCTGTTTGTTCCAGAAGATGGCGAGGCACAAGA AATTGAGGTTTACAACTTTACAGGTGCTGGTGGGGTAGCACAGGCCATGTACAACACTGATGAGTCCATCCGCTCATTTGCTGATGCTTCTATGAACGTT GCTTTTGAGAAAAAGTGGCCACTTTATCTTAGCACAAAAAATACCATCCTCAAGAAGTACGACGGAAGATTCAAGGATATCTTTCAAGAAGTTTATGAAG CTAGCTGGAAGTCCAAGTTTGACGAGGCTGGAATATGGTATGAGCACCGACTCATTGATGATATGGTGGCCTATGCTCTCAAGAGTGAAGGAGGATACGT ATGGGCTTGCAAGAATTATGATGGAGATGTCCAGAGTTTTGGATCTCTTGGATTGATGACATCTGTACTGGTATGCCCTGATGGAAAGACCATCGAAGCT GAGGCAGCCCACGGAACTGTCACTCGCCATTACAGAGTTCATCAGAAAGGTGGTGAAACCAGCACCAACAGTATCGCTTCAATCTTTGCTTGGACTAGAG GACTTGCACACAGGGCAAAGCTGGACGACAATGCTAGACTCCTGGAATTCACCGAGAAACTCGAAGCTGCCTGCATCGGAACTGTGGAGTCTGGAAAGAT GACCAAAGATCTTGCGCTGATCAGTCATGGATCCAACTTGACCAGGGAGCATTACCTCAACACTGAGGAGTTCATTGATGCTGTTGCTGCTGAGCTGAAG ACAGCACTCTCTGCTTGA
AA sequence Show only first row Show all	>Lus10020798 pacid=23140857 polypeptide=Lus10020798 locus=Lus10020798.g ID=Lus10020798.BGIv1.0 annot-version=v1.0 MAFEKIKVTNPIVEMDGDEMTRVIWQSIKDKLILPFVELDIKYFDLGLPHRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFNLKQMWISPNGT IRNILNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYKAKDTVIKGKGKLKLLFVPEDGEAQEIEVYNFTGAGGVAQAMYNTDESIRSFADASMNV AFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKFDEAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSFGSLGLMTSVLVCPDGKTIEA EAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNARLLEFTEKLEAACIGTVESGKMTKDLALISHGSNLTREHYLNTEEFIDAVAAELK TALSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	0	1
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	1.0	0.9686
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	1.4	0.9655
AT2G26920			Ubiquitin-associated/translati...		Lus10026781 [exp]	1.7	0.9634
AT4G38640			Plasma-membrane choline transp...		Lus10034492 [exp]	3.6	0.9479
AT1G09740			Adenine nucleotide alpha hydro...		Lus10015896 [exp]	3.7	0.9555
AT3G19080			SWIB complex BAF60b domain-con...		Lus10009333 [exp]	3.9	0.9603
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	4.0	0.9610
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10004139 [exp]	5.8	0.9435
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10034619 [exp]	6.0	0.9576
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	6.3	0.9531

Compare expression of checked genes

Lus10020798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.