Plant FIBer expression Database

Lus10020799 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65900 422 / 1e-146 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007381
[exp]
722 / 0 AT1G65900 459 / 8e-161 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G139400
[exp]
476 / 2e-168 AT1G65900 541 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10020799 pacid=23140917 polypeptide=Lus10020799 locus=Lus10020799.g ID=Lus10020799.BGIv1.0 annot-version=v1.0
ATGAAATGCTATTCTTCTTCATCTGCTTTTCACCGACAAGCATTATTGCTAGCTGCGGTGGTACTGGTGGCCTTGGCGGCTTGTGTTAAAACAGGGAAAG
CAGGGGAAATTAGTAGTGTGTCCAAGGTTGAAGATGCGGATAACTTCCATATATACTACGGACAGACCTTCAAAGTGATTAAGAACGCCATTGATGGGAG
AAGCTACCTTCTGATCCAGAACAACTCCAAGATGGCTGCTAGGACTAAGTACTGCACCCAGCGGATCAGATCTTTCCTCGTCCCTTTCTCCAACTTCTCC
GCTGATACTTACTTTTTCCCTGTTTCCTATTTCGAGTTGCTAGGATTACTTGGGAACCTGAAGGGAATGACAACAAACGCAGTGGCTTCTGTATGCACCC
TGAAACTATACGAAAAAGGCCAAATCGCCGTAGTTAATTACAAGGATCGACCCCAGGATTCGACGCAGTTCGCAGCCAATTTCGTTACGAACACAGATGT
TCAACCGCAACAAACCTGCAACTACGCCGACTTCCTGCCTTTCAACGAGGATCACCCTCTGCAGCGAGCAGAGTGGATCAAATTCATTGCTGTTTTTGCA
AACCTTGAGGCAAGGGCCAACCAAGTGTACGACAGTATTAAGGAAAATTATATGTGCTTGGCTGGAGCTGCAGCCAACCAAACCAGACCGTTTAAGCCGG
TTGTTGCCTGGTTGGGTTTTTACAACAACATTTGGTCTTTTACTCAGGACAAATCCAAATTGAAGTATGTGGAAGATGCAGGTGGGGAGAACATGGACAT
CTCAATAAACAAAGTAACCTACAACATCTCCAACCCTGATGATCTGGAGGCACTCCATGCTATCCTTTGTAACGTCGGCGTCGAAGATCGCTCTTGCTTT
GCCTTCCTATCTAACCAGACCTTGTGGCGATACGACAAGAGACAGTACAATTCCACCCTTGATTGGTACGATGGAGCAGTGTCGCAGCCGCAACTGGTTT
TAGCAGATCTTATTGAAGCATTTCCCCCCACTGCTGCAAATTCCACCACCACTTTCTTAAGGAACATTGCTAAGGGTGAAGGTGTTGTGAGCTTAGATGG
TAGCATGTGTGACAAGGAGGATTTCTCTGCTCCCACCGAGCCGACCATCATTCCTTGTCCGAAACCGTAG
AA sequence
>Lus10020799 pacid=23140917 polypeptide=Lus10020799 locus=Lus10020799.g ID=Lus10020799.BGIv1.0 annot-version=v1.0
MKCYSSSSAFHRQALLLAAVVLVALAACVKTGKAGEISSVSKVEDADNFHIYYGQTFKVIKNAIDGRSYLLIQNNSKMAARTKYCTQRIRSFLVPFSNFS
ADTYFFPVSYFELLGLLGNLKGMTTNAVASVCTLKLYEKGQIAVVNYKDRPQDSTQFAANFVTNTDVQPQQTCNYADFLPFNEDHPLQRAEWIKFIAVFA
NLEARANQVYDSIKENYMCLAGAAANQTRPFKPVVAWLGFYNNIWSFTQDKSKLKYVEDAGGENMDISINKVTYNISNPDDLEALHAILCNVGVEDRSCF
AFLSNQTLWRYDKRQYNSTLDWYDGAVSQPQLVLADLIEAFPPTAANSTTTFLRNIAKGEGVVSLDGSMCDKEDFSAPTEPTIIPCPKP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G65900 unknown protein Lus10020799
[exp]
0 1
AT1G48100 Pectin lyase-like superfamily ... Lus10037834
[exp]
1.7 0.9176
AT1G22490 bHLH bHLH094 basic helix-loop-helix (bHLH) ... Lus10000332
[exp]
2.8 0.9029
AT5G09760 Plant invertase/pectin methyle... Lus10013720
[exp]
4.9 0.8655
AT1G48100 Pectin lyase-like superfamily ... Lus10017109
[exp]
5.9 0.8565
AT2G06925 ATSPLA2-ALPHA, ... PHOSPHOLIPASE A2-ALPHA, Phosph... Lus10011960
[exp]
6.6 0.8385
AT1G72210 bHLH bHLH096 basic helix-loop-helix (bHLH) ... Lus10029950
[exp]
7.7 0.8454
AT5G35400 Pseudouridine synthase family ... Lus10027594
[exp]
12.5 0.8775
AT5G15780 Pollen Ole e 1 allergen and ex... Lus10005086
[exp]
24.0 0.8531
AT5G09760 Plant invertase/pectin methyle... Lus10005587
[exp]
25.0 0.8107
AT3G16300 Uncharacterised protein family... Lus10025833
[exp]
25.3 0.8414

Lus10020799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.