Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37478 132 / 1e-39 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G01015 99 / 2e-24 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G15510 94 / 9e-23 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT1G03780 62 / 2e-11 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3) AT2G35880 43 / 5e-05 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007382 [exp] 301 / 1e-105 AT5G37478 149 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10010706 [exp] 99 / 2e-24 AT5G15510 476 / 2e-165 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10030836 [exp] 91 / 1e-21 AT3G01015 413 / 8e-141 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10030650 [exp] 91 / 3e-21 AT5G15510 404 / 4e-137 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10018608 [exp] 56 / 2e-09 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10017715 [exp] 54 / 1e-08 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10039844 [exp] 54 / 2e-08 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10016193 [exp] 41 / 0.0003 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10033674 [exp] 40 / 0.0008 AT1G03780 718 / 0.0 targeting protein for XKLP2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144061 [exp] 162 / 5e-51 AT5G37478 154 / 5e-48 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.017G092100 [exp] 96 / 2e-23 AT5G15510 403 / 5e-136 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.004G118700 [exp] 81 / 5e-18 AT5G15510 410 / 8e-139 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.017G013100 [exp] 59 / 3e-10 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.007G138600 [exp] 53 / 3e-08 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.016G066600 [exp] 40 / 0.0004 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G200400 [exp] 39 / 0.0008 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10020800 pacid=23140847 polypeptide=Lus10020800 locus=Lus10020800.g ID=Lus10020800.BGIv1.0 annot-version=v1.0 ATGGACAAAGTTCACACTAAGTCCACGAAGACTAGCACCCAATCCTCAGTTACAATGAGCTCTCCTACCAGAGGAATGAGAAAAGAAGAAGGGAAAGAGC GGGCCGTGGAGAAAACAAAGACAAGCCCAAGAATGAGCCCAGGAGCTTCTTCCAACAAAGAGAACAACACAAACACGAAGAAGCCCAACCAGGAGTTCAA ACTCCATTCTGAAGAAAGAGCTATGAGACGAGCCATGTTCAACTATTACGTTGCAACCAAAATCTACGTCGTAGAGTACGAAAAAAGACAGCTAGAGAGG CTCCAAAAGTTGATTGATGAAGAAGAAGTGAAGTCGCTAAGGAAGAAAATGGTTCCCAGAGCTCAATTGATGCCCTACTTTGACAAACCTTTCTCCCCAC AGAGATCAAACAGGCCACTGACTACGCCAAGAGAGCCAAGAATCAAAGTGGTGAACAATAACAAGTACATGAGTTGCATCTCTGAGAATGAGATGTACAG TTTTCTGAACCCAGCTAGTCAGCAGCATCAGACATGGAACCCTGCTCATTGA
AA sequence Show only first row Show all	>Lus10020800 pacid=23140847 polypeptide=Lus10020800 locus=Lus10020800.g ID=Lus10020800.BGIv1.0 annot-version=v1.0 MDKVHTKSTKTSTQSSVTMSSPTRGMRKEEGKERAVEKTKTSPRMSPGASSNKENNTNTKKPNQEFKLHSEERAMRRAMFNYYVATKIYVVEYEKRQLER LQKLIDEEEVKSLRKKMVPRAQLMPYFDKPFSPQRSNRPLTTPREPRIKVVNNNKYMSCISENEMYSFLNPASQQHQTWNPAH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37478			TPX2 (targeting protein for Xk...		Lus10020800 [exp]	0	1
AT2G04850			Auxin-responsive family protei...		Lus10001736 [exp]	1.7	0.9870
AT5G61340			unknown protein		Lus10034727 [exp]	2.8	0.9839
AT5G61340			unknown protein		Lus10021641 [exp]	3.0	0.9831
AT1G11655			unknown protein		Lus10020050 [exp]	4.0	0.9741
AT1G71740			unknown protein		Lus10034266 [exp]	4.2	0.9658
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10026541 [exp]	5.9	0.9772
AT3G61750			Cytochrome b561/ferric reducta...		Lus10012625 [exp]	6.0	0.9819
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10041106 [exp]	8.1	0.9759
AT2G17940			Plant protein of unknown funct...		Lus10041916 [exp]	10.6	0.9759
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10009922 [exp]	10.6	0.9671

Compare expression of checked genes

Lus10020800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.