Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03210 424 / 6e-149 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007384 [exp] 634 / 0 AT3G03210 432 / 4e-152 unknown protein Lus10031359 [exp] 488 / 2e-174 AT3G03210 410 / 2e-143 unknown protein Lus10010965 [exp] 473 / 2e-168 AT3G03210 404 / 4e-141 unknown protein Lus10002776 [exp] 65 / 4e-12 AT3G54860 102 / 3e-25 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G080600 [exp] 486 / 2e-173 AT3G03210 438 / 4e-154 unknown protein Potri.017G139800 [exp] 470 / 6e-167 AT3G03210 432 / 1e-151 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020802 pacid=23140830 polypeptide=Lus10020802 locus=Lus10020802.g ID=Lus10020802.BGIv1.0 annot-version=v1.0 ATGTTTGGCGGGATACAGCTGGGAATGCTGCTTGCTTGCATTGTGTTGTTTGTGCCTATGGTAATGGCGGGATGGCATTTGAGCCGTCACAAGATGCTCT TCTTCAGCTGCGCCCTTTTCATCATCTCTCTCGCGGTATGCCTCCACTTGACTCCTTATTTCCCTTCCGTCAACGATTTCGTTACCTCGGTCCAATCAGT CGTTATATTCGATAACCATGAAGATTCTTGCATTAACTTGGTGAATGAAATTGCCTGGGATGTCAAGCAACACGGTAATCATGTAGCTCGAGGTGACGCA TCGCCGGTTGTTTATGATAAGAATTGGGATTGGTCCAAGTCTTGGAAAGTGATGGCGTGTGAGTTTCAAAAATTAGGCAAGGGGGATATTTCGGACTTGC TCAACGGGACGTGGATTGTGGTGGCAGGGGATTCACAGTCACGGTTACTGGTTCAGACATTGTTGGGTTTGGTGTTGGATTCTGAACGAATGGAATCGAT CAAAGGGGAGTTGTTTAAGAGGCACAGTGATTATGGAATTGTTGTTGAAGAAATGGGAATGAAATTGGATTTCGTGTGGGCACCTTATGCTGATAACTTG ACTAATATGATGATGGGGTTTAAGCAGAACGGAAGCTACCCTGATGTTATGGTAATGGGAACTGGGCTGTGGCATATGCTTCATGTCACGAACGCATCGG ATTATGGTGTTTCTTTGAAGTCGCTGATGGGTACAGTCTCAGTTAGGTCGCCCCATTTGTTTTGGCTTGGCATGCCGATGTTGGTAAATGGGATGCTAAA CACGGGAGAGAAGAGAGAGAGAATGACTGATGAAATGTGGCATGCTTATGATAAAGTGCTTCGTGACAGTAGGCTCTTGCGTAGATATGGTGGACCGTTT GTGTTGCTTGATATTCAATCCTTGAGTTGGAATTGTGGTCCTCGTTGTACAGTTGACGGACTGCATTATGATGGAGCTGTTTATGAAGCAGTTGTACAGA TTTTGTTGAATGCATTGCTTATAGAATCTCATCCGACGTTCAGAGCTGAATAG
AA sequence Show only first row Show all	>Lus10020802 pacid=23140830 polypeptide=Lus10020802 locus=Lus10020802.g ID=Lus10020802.BGIv1.0 annot-version=v1.0 MFGGIQLGMLLACIVLFVPMVMAGWHLSRHKMLFFSCALFIISLAVCLHLTPYFPSVNDFVTSVQSVVIFDNHEDSCINLVNEIAWDVKQHGNHVARGDA SPVVYDKNWDWSKSWKVMACEFQKLGKGDISDLLNGTWIVVAGDSQSRLLVQTLLGLVLDSERMESIKGELFKRHSDYGIVVEEMGMKLDFVWAPYADNL TNMMMGFKQNGSYPDVMVMGTGLWHMLHVTNASDYGVSLKSLMGTVSVRSPHLFWLGMPMLVNGMLNTGEKRERMTDEMWHAYDKVLRDSRLLRRYGGPF VLLDIQSLSWNCGPRCTVDGLHYDGAVYEAVVQILLNALLIESHPTFRAE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03210			unknown protein		Lus10020802 [exp]	0	1
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	5.9	0.7688
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Lus10043358 [exp]	13.0	0.7152
AT3G05545			RING/U-box superfamily protein...		Lus10031491 [exp]	17.2	0.7354
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10020003 [exp]	18.7	0.7380
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	25.5	0.7323
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10023527 [exp]	37.3	0.7207
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10031695 [exp]	41.1	0.7294
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10024961 [exp]	42.8	0.7270
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10002221 [exp]	44.3	0.7040
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	56.1	0.6944

Compare expression of checked genes

Lus10020802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.