Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05390 273 / 2e-87 unknown protein AT4G01240 274 / 1e-85 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G40830 265 / 8e-85 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G27230 262 / 7e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29790 238 / 7e-75 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G19120 59 / 5e-09 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G31850 56 / 3e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G10440 55 / 5e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 54 / 1e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 52 / 6e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007385 [exp] 687 / 0 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007588 [exp] 343 / 4e-115 AT5G40830 232 / 6e-72 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010138 [exp] 278 / 2e-89 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004494 [exp] 271 / 8e-87 AT3G05390 699 / 0.0 unknown protein Lus10029907 [exp] 267 / 3e-85 AT3G05390 697 / 0.0 unknown protein Lus10035135 [exp] 261 / 2e-82 AT4G01240 367 / 1e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034506 [exp] 255 / 7e-81 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024318 [exp] 252 / 9e-80 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033164 [exp] 256 / 3e-79 AT3G27230 451 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G083800 [exp] 594 / 0 AT3G05390 278 / 3e-89 unknown protein Potri.017G135100 [exp] 590 / 0 AT3G05390 278 / 3e-89 unknown protein Potri.004G231100 [exp] 417 / 5e-144 AT3G05390 287 / 2e-92 unknown protein Potri.005G236600 [exp] 279 / 3e-90 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 275 / 1e-88 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G116900 [exp] 275 / 3e-88 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G019400 [exp] 273 / 2e-87 AT3G05390 753 / 0.0 unknown protein Potri.002G165300 [exp] 269 / 8e-86 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G352700 [exp] 239 / 3e-75 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.011G079000 [exp] 234 / 3e-73 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10020803 pacid=23140841 polypeptide=Lus10020803 locus=Lus10020803.g ID=Lus10020803.BGIv1.0 annot-version=v1.0 ATGGATTCTCCTCATAAACAGAAACCTCTATCGACAAACCTCTTCTTCCTCTTCCTCCTCCTCTCCACAAATCTCGTCACCCTCTTCCTCTCTTCCACCT TCTACACCTCCTCCTCTTGCTCCCTCTCCTCCACCGCCCATTCCCTCATCCCTTCCACCGTCTACTCCTCCCCCGCCGCTGCTGCAGCCGCAGAAGAATC TTCATCATCATTAGAGTCAACCAGCAGCAGCAGTACGGATGATGACGTCGACCTTCCAGCTGAGTTCATTGCCTTCACGTCAGGCCAAGTGCTGCCTTTC GGTTTTAACACCAACTTCGACTCCGACAAAATCTACCCTCCGGTGGGGAGCTCGTGCACCCGCTTCCCTGACGAGCTCCGGCAGTTCATGTCCTACAAAG TCAACGGTTCATGTCCTGATGATGAGCTGCTTGCTCAGAAGCTTCTTCTTAAAGGATGCGAGCCGCTTCCTCGACGGAGGTGTCGTCCGGCGAGCCAGAA TGATTATGTAGAGCCTTACCCTCTGCCGGAGTCGCAGTGGAAGACCCCGCCGGATTCCACCGTTGTCTGGACTGCCTACACTTGCAAATCCTTCCAGTGC CTCATTGACAGGTTCTGGAAGCAGAAGGGATTCGACGACTGCAAGGACTGCTTCGACCTAAACGGCAGAGAAAAACACCGATGGGCACCCCGCCCGATCA TCGAAGGCAGCCTCGACTTCACCATCGACGAGGTCCTGGCCACCAGAGCCCCCGGAACAGTCCGAATTGGGATAGACCTTGGAGGAGGAGTCGCCACATT CGCCGTCCGGATGAAGGAGCGCGATGTTACGATCATAACCACGTCGATGAACCTCAACGGCCCCTTCAACAACTTCATCGCGGCTCGAGGTGTGATGCCG ATGTACATCAGCATCTCGCAGAGGCTGCCGTTCTTCGACAACACGCTGGACATCGTGCACTCGATGCACGTGCTCAGCAACTGGATCCCGACCACGCTGC TGCATTTCTTGATGTTTGATGTTTACAGGGTGCTGAGGCCGGGTGGCGTGTTCTGGTTGGATCATTTCTTCTGTGTCGGGGATGAGCTGAGGGATGTTTA CGGGCCGTTGATAGAAAGTATTGGGTTTAAGAGGGTGAAGTGGGTTGTTGGCAAGAAGGTTGATCGTGGGGAAGAGCTTAGAGAGATGTACTTGTCTGCT TTGCTTGAGAAGCCTTTGAAGAACTCTTGGTGA
AA sequence Show only first row Show all	>Lus10020803 pacid=23140841 polypeptide=Lus10020803 locus=Lus10020803.g ID=Lus10020803.BGIv1.0 annot-version=v1.0 MDSPHKQKPLSTNLFFLFLLLSTNLVTLFLSSTFYTSSSCSLSSTAHSLIPSTVYSSPAAAAAAEESSSSLESTSSSSTDDDVDLPAEFIAFTSGQVLPF GFNTNFDSDKIYPPVGSSCTRFPDELRQFMSYKVNGSCPDDELLAQKLLLKGCEPLPRRRCRPASQNDYVEPYPLPESQWKTPPDSTVVWTAYTCKSFQC LIDRFWKQKGFDDCKDCFDLNGREKHRWAPRPIIEGSLDFTIDEVLATRAPGTVRIGIDLGGGVATFAVRMKERDVTIITTSMNLNGPFNNFIAARGVMP MYISISQRLPFFDNTLDIVHSMHVLSNWIPTTLLHFLMFDVYRVLRPGGVFWLDHFFCVGDELRDVYGPLIESIGFKRVKWVVGKKVDRGEELREMYLSA LLEKPLKNSW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10020803 [exp]	0	1
AT5G54370			Late embryogenesis abundant (L...		Lus10017577 [exp]	2.0	0.9884
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	2.0	0.9876
AT1G80530			Major facilitator superfamily ...		Lus10017480 [exp]	3.5	0.9798
AT1G06930			unknown protein		Lus10009929 [exp]	3.9	0.9836
AT5G54370			Late embryogenesis abundant (L...		Lus10033540 [exp]	3.9	0.9857
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10010001 [exp]	4.0	0.9825
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10019400 [exp]	4.4	0.9764
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10012157 [exp]	4.7	0.9809
AT3G19990			unknown protein		Lus10028681 [exp]	4.9	0.9835
AT4G37160		SKS15	SKU5 similar 15 (.1)		Lus10019642 [exp]	5.2	0.9820

Compare expression of checked genes

Lus10020803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.