Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37020 184 / 9e-55 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G30330 152 / 3e-43 ARF ARF6 auxin response factor 6 (.1.2) AT1G19220 115 / 2e-30 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 114 / 4e-30 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G19850 108 / 7e-28 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G60450 84 / 2e-19 ARF ARF4 auxin response factor 4 (.1) AT1G59750 75 / 3e-16 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G62000 74 / 5e-16 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT4G23980 69 / 4e-14 ARF ARF9 auxin response factor 9 (.1.2) AT3G17600 66 / 4e-14 AUX_IAA IAA31 indole-3-acetic acid inducible 31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007386 [exp] 303 / 1e-99 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 248 / 1e-78 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 244 / 3e-77 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10020804 [exp] 173 / 1e-50 AT5G37020 913 / 0.0 auxin response factor 8 (.1.2) Lus10017640 [exp] 149 / 4e-42 AT5G37020 762 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 149 / 5e-42 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10017641 [exp] 145 / 5e-41 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10022943 [exp] 118 / 3e-31 AT1G19220 546 / 4e-177 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10027600 [exp] 117 / 3e-31 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G141000 [exp] 209 / 6e-64 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.004G078200 [exp] 203 / 6e-62 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.001G358500 [exp] 155 / 2e-44 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.011G091900 [exp] 149 / 2e-42 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2) Potri.002G055000 [exp] 146 / 3e-41 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.005G207700 [exp] 145 / 8e-41 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.018G145800 [exp] 117 / 3e-31 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G138500 [exp] 113 / 1e-29 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.005G236700 [exp] 112 / 3e-29 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.018G063000 [exp] 109 / 2e-28 AT1G19220 735 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10020805 pacid=23140829 polypeptide=Lus10020805 locus=Lus10020805.g ID=Lus10020805.BGIv1.0 annot-version=v1.0 ATGCCTTTAAGCGTGGCTGGGTTTCAGAATTCTCTCTACAGTTCTTCTGAGTTCTTACCCGGTACAGGAGGGCAAGTAGAGGCGCTAAACGCAGGTCCAA TATTTGTGAAGGTTTACAAATCTGGATCGGTTGGGCGGTCCCTTGACATCTCCCGGTTCAGCAGCTATCATCAGCTGCGGGAGGAACTGGCACAGATGTT CGGGATCGAGGGGAAGTTGGAAAACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAAGGAGGATGATGTTCTTCTCCTTGGAGACGGTCCTTGG GACGCATTTGTAAACAACGTGTGGTATATCAAGATACTTTCTCCGGAGGATGTAGTGAAGATGGGGGATCAAGGGGTTGAATCGTTCAGCCCGAATACAC GCCAAAGAACGATCAGCAGCAGGGAACCGGACTTTAGCTCGGGTTCACTTAGATACTGA
AA sequence Show only first row Show all	>Lus10020805 pacid=23140829 polypeptide=Lus10020805 locus=Lus10020805.g ID=Lus10020805.BGIv1.0 annot-version=v1.0 MPLSVAGFQNSLYSSSEFLPGTGGQVEALNAGPIFVKVYKSGSVGRSLDISRFSSYHQLREELAQMFGIEGKLENPHRSGWQLVFVDKEDDVLLLGDGPW DAFVNNVWYIKILSPEDVVKMGDQGVESFSPNTRQRTISSREPDFSSGSLRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10020805 [exp]	0	1
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10026195 [exp]	3.2	0.8465
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10025747 [exp]	8.4	0.8151
					Lus10037277 [exp]	8.8	0.8405
AT5G02440			unknown protein		Lus10025345 [exp]	11.2	0.8132
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10038601 [exp]	14.1	0.8492
AT1G54385			ARM repeat superfamily protein...		Lus10002627 [exp]	16.6	0.8095
					Lus10039628 [exp]	17.9	0.7969
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10020804 [exp]	18.6	0.8347
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10019703 [exp]	23.6	0.8052
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10001399 [exp]	24.3	0.8128

Compare expression of checked genes

Lus10020805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.