Plant FIBer expression Database

Lus10020806 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52640 682 / 0 Zn-dependent exopeptidases superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007387
[exp]
1073 / 0 AT3G52640 830 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2.3)
Lus10007388
[exp]
331 / 2e-110 AT3G52640 194 / 1e-58 Zn-dependent exopeptidases superfamily protein (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G082900
[exp]
766 / 0 AT3G52640 835 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF05450 Nicastrin Nicastrin
Representative CDS sequence
>Lus10020806 pacid=23140883 polypeptide=Lus10020806 locus=Lus10020806.g ID=Lus10020806.BGIv1.0 annot-version=v1.0
ATGAAGCTCTACTTCTCGTTAGTAGTGTTTCTACTGCTGTCGAGATGCATCCGCGGAATCTCCGGACAAGTGAAATCAATGGAGTCTGTTCCTGATCTGC
AGAATTCGATGTACATGGTCGTCGATGGCTTACCCTGCGTTCGACTGCTCAATCTTTCTGGAGAAATAGGCTGTGCTAATCCCGGGAGAGACAAGGTTGT
AGCTCCCGTTGTGAGATATCAGGCTGGTCTTGATTTGGGTCTTCCTTCGGCTGTTCTGGTCTCGCTCGATGGAATTGGTGAACTCTTTGATAGAATATCG
AAAGACTCGGCGCTTTCAAAGAACATTGGTGGTATTTTAGTTCAATCTGGAGCTGATACTCGCAGCAAACTGAAAGGATTCTCTCCCGATTACAAGTTCC
CACAAGCTGAATTTTCCCCTTATCAGAAGACCGATTACGAGTGGAATCCTATGGGATCTGGTATAATGTGGAAAAATTATGATTTTCCAATCTTCTTACT
GACTGAGAATAGCACACAGATCATGAAAGAGATTTCTTTGAAGAATGAGAAGAATAGCAAAGGTTATACTTCAAACATGGCTGAATTTGATTTGGTGATG
CAGGGCAGTGTTTGGTCATCGCTTCCTCCAATCAATATATCATCCTCTAACAAACCGAAGCCAGCTATATTAACAGTAGCATCTATGGATGCTGCTTCGT
TCTTCCATGACAAAAGCTTAGGTGCAGAATCCCCAATCACGGGGTTGATTGCATTGCTTGCAGCAGTTGATTCACTTTCTCAAGTGGATGGTTTAGGCGA
TCTTGAAAAACAGCTTGTTTTTGCAGTTTTTACTGGAGAAGCATGGGGGTACCTTGGTAGTAGACGATTCTTGCTTGAACTTGATTTGCAGTCAAATGCT
GTTACTGGCCTTGACAACCAACTGATTGAGACGGTAATTGAAATTGGATCAGTCGGGAAGGCCTTCAATCAAGGGACCAAAAGCTTCTTTGCTCACACCA
CTGGGGTTTCATCTGCCGAAAACACAACTTTGAGTGCTTTAAAACATGCTCAAATTTCTCTGGAGTCGCAGAATATTTCAGTTTCATTGGCAAGCACATC
AAACCCTGGAATACCACCATCATCCCTGATGTCATTTTTTAAAAAGACTGATGCTGCTTTCCGCAACAATTTTTACCATAGTCATCTTGATGATAACTCA
AACATAAACTCATCATCAATCGTCGCAGCTGCATCTCTAGTTGCTCGGACCCTTTACATCCTTGCAAACAAGAACAAAAATATAAAGAACTCTGTTCTGA
ACTCCATCAATGTTAATGCCTCCCTGGTGGAAGAGATGTTGAGTTGTCTGTTGAAGTGCGATCCCGGTCTGTCTTGTGATCTGGTGACGAACTATATTTC
CACGACCACAACATGCCCTGTTCATTATGTCGGCGTATTCCAAGGGGAGCCTTCTGCGGCTCCCGATACTGGATCCATTAACGATGTTTGCCGGTTCATT
TGGAACTTCCTGGCTGACAAAACATCTATGCTCAAGGAAAACAGTAAATCTAACTGCTCACAAGACTGCAGCAAGAAAGATGAAGTGTGCGTCAAAGCAG
AAACTGAAGGTGTTTGCGTTACTTCCACAACCAGATATACGAGAATTCCCGGGTTTGTTTGTGCTTGCTGCAGGTACGTACCGGCCTATTCAACCAGGTT
GAAATACGATTCTGGGGTATGGACCGTCATGCCTCTAAATTCATCGGATCCCATGGCTAAGGCGGACCCGGTTTGGACGGAGAGCTACTGGGACGTGATC
GGTCTGAAGGTATACGAAGTACAGGATGCTAATTTTGATAGGATCATTTTACTAGCGGGAATCGCTGTAACTGTGTTGGCTTACATTGCCATTGTAATTA
CAAGAGCGTTCATCACAAAGGCGTTGAAGCGAGATTGA
AA sequence
>Lus10020806 pacid=23140883 polypeptide=Lus10020806 locus=Lus10020806.g ID=Lus10020806.BGIv1.0 annot-version=v1.0
MKLYFSLVVFLLLSRCIRGISGQVKSMESVPDLQNSMYMVVDGLPCVRLLNLSGEIGCANPGRDKVVAPVVRYQAGLDLGLPSAVLVSLDGIGELFDRIS
KDSALSKNIGGILVQSGADTRSKLKGFSPDYKFPQAEFSPYQKTDYEWNPMGSGIMWKNYDFPIFLLTENSTQIMKEISLKNEKNSKGYTSNMAEFDLVM
QGSVWSSLPPINISSSNKPKPAILTVASMDAASFFHDKSLGAESPITGLIALLAAVDSLSQVDGLGDLEKQLVFAVFTGEAWGYLGSRRFLLELDLQSNA
VTGLDNQLIETVIEIGSVGKAFNQGTKSFFAHTTGVSSAENTTLSALKHAQISLESQNISVSLASTSNPGIPPSSLMSFFKKTDAAFRNNFYHSHLDDNS
NINSSSIVAAASLVARTLYILANKNKNIKNSVLNSINVNASLVEEMLSCLLKCDPGLSCDLVTNYISTTTTCPVHYVGVFQGEPSAAPDTGSINDVCRFI
WNFLADKTSMLKENSKSNCSQDCSKKDEVCVKAETEGVCVTSTTRYTRIPGFVCACCRYVPAYSTRLKYDSGVWTVMPLNSSDPMAKADPVWTESYWDVI
GLKVYEVQDANFDRIILLAGIAVTVLAYIAIVITRAFITKALKRD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G52640 Zn-dependent exopeptidases sup... Lus10020806
[exp]
0 1
AT5G10420 MATE efflux family protein (.1... Lus10015904
[exp]
1.0 0.8841
AT1G53710 Calcineurin-like metallo-phosp... Lus10036645
[exp]
5.9 0.8146
AT3G25140 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRA... Lus10029734
[exp]
11.6 0.7971
AT5G51410 LUC7 N_terminus domain-contain... Lus10031732
[exp]
22.8 0.8249
AT4G17380 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, M... Lus10028966
[exp]
26.2 0.8084
AT5G65540 unknown protein Lus10025712
[exp]
31.6 0.8173
AT3G21480 BRCT domain-containing DNA rep... Lus10038633
[exp]
33.2 0.8133
AT5G03730 AtCTR1, SIS1, C... SUGAR-INSENSITIVE 1, CONSTITUT... Lus10043428
[exp]
46.5 0.7801
AT4G16580 Protein phosphatase 2C family ... Lus10016309
[exp]
46.8 0.7962
AT5G39360 EDL2 EID1-like 2 (.1) Lus10029662
[exp]
47.2 0.8036

Lus10020806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.