Plant FIBer expression Database

Lus10020807 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G37550 54 / 4e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G085100
[exp]
81 / 2e-19 AT5G37550 80 / 2e-18 unknown protein
Potri.017G131300
[exp]
66 / 4e-14 AT5G37550 63 / 2e-12 unknown protein
PFAM info
Representative CDS sequence
>Lus10020807 pacid=23140826 polypeptide=Lus10020807 locus=Lus10020807.g ID=Lus10020807.BGIv1.0 annot-version=v1.0
ATGGTGAAAGCTGCGGCATGGGCGTGGTATCAACATGGTTCCGGCTCATCAGAAGGGAAACCTCCGGTGGCCGAATTCGATGTGGCTGCTACACTAATCA
AGCCTGCAGCCAGGCCATCCAGCAGGTACATGGTGGAAGCTATGAGATCAGCAGCAGCAGGTACAAGTACGCCGCATGATCCACGCCGTGATTATTCTCT
ACTGGATTCCCATGAAATTCGGAGCATTTCCAATCAACTGGGGAATCTGATCCGCGTCAGCAGAAACGGAAATGACTCTGCCACCACGTTTCTTGCTCCG
CAAGAAACTGCGAGCAGCCAGGGGAAGAAGGGTTCGAGTTCGAGTTCGCGGGCTTTGATTACACGGCTGAGAGAGTACCCACGTCGACCGGTGATCACTT
GTGGAAAAGTGAAGGACGTGGAGGTAAGTGCTTTGGTGCGTCGCCGGAGAAGGAGATAG
AA sequence
>Lus10020807 pacid=23140826 polypeptide=Lus10020807 locus=Lus10020807.g ID=Lus10020807.BGIv1.0 annot-version=v1.0
MVKAAAWAWYQHGSGSSEGKPPVAEFDVAATLIKPAARPSSRYMVEAMRSAAAGTSTPHDPRRDYSLLDSHEIRSISNQLGNLIRVSRNGNDSATTFLAP
QETASSQGKKGSSSSSRALITRLREYPRRPVITCGKVKDVEVSALVRRRRRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G37550 unknown protein Lus10020807
[exp]
0 1
AT1G25450 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA ... Lus10041452
[exp]
1.7 0.9378
AT5G23940 PEL3, DCR, EMB3... PERMEABLE LEAVES3, EMBRYO DEFE... Lus10039255
[exp]
2.4 0.9220
AT1G68530 KCS6, CER6, POP... POLLEN-PISTIL INCOMPATIBILITY ... Lus10034319
[exp]
2.8 0.9301
AT5G65380 MATE efflux family protein (.1... Lus10024945
[exp]
4.0 0.9149
AT1G17840 AtABCG11, WBC11... DESPERADO, CUTICULAR DEFECT AN... Lus10018268
[exp]
6.3 0.9053
AT1G17840 AtABCG11, WBC11... DESPERADO, CUTICULAR DEFECT AN... Lus10040644
[exp]
8.5 0.8903
AT1G16060 AP2_ERF ADAP ARIA-interacting double AP2 do... Lus10024101
[exp]
8.8 0.8608
AT5G02890 HXXXD-type acyl-transferase fa... Lus10040156
[exp]
9.5 0.8618
AT4G36250 ALDH3F1 aldehyde dehydrogenase 3F1 (.1... Lus10028357
[exp]
11.0 0.8612
AT2G47240 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1... Lus10032840
[exp]
11.5 0.8688

Lus10020807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.