Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004033 [exp] 311 / 4e-105 ND / Lus10024934 [exp] 77 / 7e-15 ND / Lus10025503 [exp] 77 / 1e-14 ND / Lus10002735 [exp] 75 / 6e-14 ND / Lus10031082 [exp] 56 / 5e-08 ND / Lus10020249 [exp] 54 / 2e-07 ND / Lus10029184 [exp] 52 / 1e-06 AT1G24020 84 / 1e-18 MLP-like protein 423 (.1.2) Lus10010702 [exp] 48 / 2e-05 AT1G24020 79 / 4e-17 MLP-like protein 423 (.1.2) Lus10016109 [exp] 47 / 2e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0345 [flax] [poplar] Aerolisin_ETX PF01117 [flax] [poplar] Aerolysin Aerolysin toxin CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10020808 pacid=23140888 polypeptide=Lus10020808 locus=Lus10020808.g ID=Lus10020808.BGIv1.0 annot-version=v1.0 ATGTCGTCTGCTTCTTCACCCCGGTTCCTGACGTTTCTTACTCGGAATGATAATTTTACTGACAATTTTGGCCAACCCTCTTCGTTTACGATGCAGATCC TTGCGACACCACATGCATCAACTGGTCACAAGCACCGGTCCATATTTTTCGGTACATTGACGAGCAGGTCAGTCGACGAGGGGATATGGAACCCGTATGC AAAATTAGAAGCGGAGGCTGCAGGCATAGGAGGAGGGATGGTGCACCTAAAGAGTAGTTACACCCAAAAGTACCTGTGCAGGGCCTCCGAAGATCCAAAC AACCCCAGTATAGAGGCCGCTGCGGATGAACATGAGGAGGACATCTCCAAGTGGTCGTGCACTTTGTTCAGGATCTCCAACAATGCTCTGGAGATACAGT ACAACAACCGGATGTGGACGCTTCATGCCGAATACGTGCGTAGCATGCACGATGGGATTTGGTTGCGCGTCGATGACGGTATACCAAGACCGAACCCGAT GGCCGTGATTTCCGCAAGATTTGGCCAGTCCGATCTAGACATGCTCCCAACTCTGCCCACCCTAGTCTGCTTTAAAGCCGACAACAACCGATACCTGCAG GTAGTTCGGGCGACTACTACAACTGGTCAAGCCGTGCATCGGGCTATGTTCACAAGTAATGACCGACGGGATCGGGTAGCACAGTTTCGGGTGGTCCCTG CTCGACTCCGTTCTGTGGTCCTCGTCCCCATGACTCTCCCTGATGCCTATCTTGTCAGGGGGATTGGCGGCGTCTATCAAGCTTCCAGTAATAGAAATGA TTGGCGTACGGCGGCCCTTGAGCCCGTTACACTCGATTTTTCTGGCCTTGCTGCTGTTGCCTTTAGAAATGTGTCCCACCTCTTTCGCCATTTTATGGTG AGGAGGGATACCGACAACGGGTTCATTGTCTCGCCCGGAGATGTTGGCATCGTAGCTCAGGCTGAGTTCCTAATCGAGGACACGGTACGGTCCAGACAGC TATCCAACATCCAGTTCTTATACGACGACATGAAGATATTGGAGCCCACACCGGTGGCTGTTTTGACCAAGAATGTTGTCAACGGGTCTAAGGTGTCCAC TCAAGAGGCGCACTTGGCGTTCAGGTACTCAGAGTATCAGAGCAACCATTGGGAGACGACACACTCGTGGCAGGTAGGGGTACAATATGGCATCACTTCC ACTGTATCTGCTCGGCTTCCAGTGCTCAAGTTCATCCGAGCGGAGACAACGGTGAGCCTGGAGGTGGAAGCAGGATATCAGGGAGAGCATGTGGCAGGGG AGACGAAAGTGGAGGAGAGCGAGATGTCGACAAGCTTGACACTACAGGTGCCGCCCAGAACCCAATCTTTTGTCCACATGACGGTGTCTAGGGCCAAAAT CCAGCTTCCCTTCACCTACACCCAGCGCGACGTGATTCATGATGGTACACTTGTTGCCTCTAAGAAGGTGGACGGCCTTTATGAAGGTGAAGCCACCCAT GTCGACTATCAAGTTGAAGAGAGCAGCCTGTAA
AA sequence Show only first row Show all	>Lus10020808 pacid=23140888 polypeptide=Lus10020808 locus=Lus10020808.g ID=Lus10020808.BGIv1.0 annot-version=v1.0 MSSASSPRFLTFLTRNDNFTDNFGQPSSFTMQILATPHASTGHKHRSIFFGTLTSRSVDEGIWNPYAKLEAEAAGIGGGMVHLKSSYTQKYLCRASEDPN NPSIEAAADEHEEDISKWSCTLFRISNNALEIQYNNRMWTLHAEYVRSMHDGIWLRVDDGIPRPNPMAVISARFGQSDLDMLPTLPTLVCFKADNNRYLQ VVRATTTTGQAVHRAMFTSNDRRDRVAQFRVVPARLRSVVLVPMTLPDAYLVRGIGGVYQASSNRNDWRTAALEPVTLDFSGLAAVAFRNVSHLFRHFMV RRDTDNGFIVSPGDVGIVAQAEFLIEDTVRSRQLSNIQFLYDDMKILEPTPVAVLTKNVVNGSKVSTQEAHLAFRYSEYQSNHWETTHSWQVGVQYGITS TVSARLPVLKFIRAETTVSLEVEAGYQGEHVAGETKVEESEMSTSLTLQVPPRTQSFVHMTVSRAKIQLPFTYTQRDVIHDGTLVASKKVDGLYEGEATH VDYQVEESSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020808 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10001510 [exp]	14.3	0.7340
AT5G20950			Glycosyl hydrolase family prot...		Lus10018102 [exp]	19.3	0.6481
AT4G18340			Glycosyl hydrolase superfamily...		Lus10023309 [exp]	31.9	0.6279
AT3G54030			Protein kinase protein with te...		Lus10035550 [exp]	32.1	0.6718
AT3G11920			glutaredoxin-related (.1)		Lus10034196 [exp]	32.4	0.6341
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10019604 [exp]	55.2	0.5919
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10029744 [exp]	66.1	0.5977
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10028236 [exp]	69.1	0.5432
AT4G18340			Glycosyl hydrolase superfamily...		Lus10038501 [exp]	131.1	0.5550
AT3G55550			Concanavalin A-like lectin pro...		Lus10010867 [exp]	132.4	0.5516

Compare expression of checked genes

Lus10020808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.