Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16100 60 / 3e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004035 [exp] 430 / 6e-152 AT5G16100 68 / 2e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223100 [exp] 89 / 3e-20 AT5G16100 72 / 7e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020810 pacid=23140838 polypeptide=Lus10020810 locus=Lus10020810.g ID=Lus10020810.BGIv1.0 annot-version=v1.0 ATGGATTCCAATCAAATAGTACCAACCCAAGGCGAAAACCCATACGAACTTGACACAGATGCAATCGAGAGGTTTCTCAAGAGTCCCGATCTCATATATC CCACTGGAAATAACTCAGGACTCAAGATCGAACTGGCTTCGGACCCTACACAAACAAGCGTAGTTGATGTTCCTGACCCTGATGATCCCATGACATGGAA TCTTGATTTCTGCTTAGAGTTTCCAGACGAAATAATACCATGTCAGGGGACAACGACCATGGGTGTGGATCAGTTGGGATCAGTTGATGATTCCGGCGAC AAGTGTAAGGAAAAATCTCCGGCGGGATTGGGTTCACCGTCAGATTATGAAACACAGAGGCCGTACTATTGGTACTATGAAGATACGTCAATTCCAGGAG GGGAAATGGAAACAGAAGAAGTTCCATTAGTCAGCGTCAATGCCAATACGTTGAATGCAGCGCTTCCACAGCCTTTCAACTGCAGTTTCTGTCAAGTTTT GAGAGAAATCGTGCACTCAGATGGTGGGAGGATAACCACTAAACTTGAGATCCTTGGGAATGTGGGCATGATTTTCCATGCCATTCTAGAGAGCCACCAA TATTTCACAGATTGCCCACTGGAGTCTTACTTCCAAATTTTCGATCTTACCGGCAAAAGCTTGGAAGAAGTAAAGCAATTGACTAAAGAATATTGTATTG GGAGAGAAAGGAAAGGGTTCTTCATGGAACAAGATAACTACTCAAATTCTATGGAGCTTTGTGCGTTGGATATGACTGGAATGACATTCTGGAAGTTCAC TCCCCCACTACCTCTGTCTATTCAACTGATCAAATGA
AA sequence Show only first row Show all	>Lus10020810 pacid=23140838 polypeptide=Lus10020810 locus=Lus10020810.g ID=Lus10020810.BGIv1.0 annot-version=v1.0 MDSNQIVPTQGENPYELDTDAIERFLKSPDLIYPTGNNSGLKIELASDPTQTSVVDVPDPDDPMTWNLDFCLEFPDEIIPCQGTTTMGVDQLGSVDDSGD KCKEKSPAGLGSPSDYETQRPYYWYYEDTSIPGGEMETEEVPLVSVNANTLNAALPQPFNCSFCQVLREIVHSDGGRITTKLEILGNVGMIFHAILESHQ YFTDCPLESYFQIFDLTGKSLEEVKQLTKEYCIGRERKGFFMEQDNYSNSMELCALDMTGMTFWKFTPPLPLSIQLIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16100			unknown protein		Lus10020810 [exp]	0	1
AT1G69210			Uncharacterised protein family...		Lus10014566 [exp]	2.8	0.6975
					Lus10001379 [exp]	3.5	0.7578
AT1G04560			AWPM-19-like family protein (....		Lus10017578 [exp]	5.9	0.6541
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10026027 [exp]	7.7	0.6790
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10009278 [exp]	8.7	0.6800
AT5G04885			Glycosyl hydrolase family prot...		Lus10005706 [exp]	18.3	0.6142
AT4G18360			Aldolase-type TIM barrel famil...		Lus10042495 [exp]	20.3	0.6218
AT2G23945			Eukaryotic aspartyl protease f...		Lus10019961 [exp]	24.2	0.6049
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010863 [exp]	26.1	0.6280
AT2G43590			Chitinase family protein (.1)		Lus10035618 [exp]	30.7	0.5703

Compare expression of checked genes

Lus10020810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.