Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37590 384 / 3e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 47 / 2e-05 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004036 [exp] 617 / 0 AT5G37590 360 / 3e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017009 [exp] 45 / 9e-05 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021336 [exp] 45 / 9e-05 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10042120 [exp] 44 / 0.0003 AT1G27500 828 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002376 [exp] 43 / 0.0004 AT1G27500 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G085200 [exp] 389 / 5e-131 AT5G37590 530 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G173400 [exp] 45 / 9e-05 AT4G10840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G208900 [exp] 44 / 0.0002 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 43 / 0.0005 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020811 pacid=23140952 polypeptide=Lus10020811 locus=Lus10020811.g ID=Lus10020811.BGIv1.0 annot-version=v1.0 ATGCAATTCCAGCTACTTCGTCGAGCAGCAGCGTCTCTGGCCAGAAGGATTGAAGTTCCTACCCAGCTCGCCACTCCTTCCGTAAAACCACTCCTTGTTT CCTCCACTTCACAGTCTGGAAGGAGTATCAGAGCCAATGAATTTGGATTTGGCGGTTCAACTTGGGGGAGGAATGAAAATCGTTCTCTTCTATGGATTAT TGCTGCTGGACAAGCAGCAATTTTCATCGGGATTGATGGAAACCTTGTACTAGCAGATGCTTCTGTAGAGAGTAATCCTAAAACTGAATTGGAAGAGACT GGCGAAATTGGCTTGCAGAAAATTGACGATGGTTCCGTAGTGTCAAATATACATACTTCTAAGTGGAGAGTTTTTACAGACAGTGGGCGAGATTTTTTCC TTCAGGCAGGCATCTTTTCTGTTGCTTCTTCTGTTCTTGGGAAATTGGACAATGCAGAAAAGCTCTTCATTTCTGCATTGAATGAAGCCAAAGAAGGGTT CGGAGAGAAAGATCCCCATGTTGCATCCGCATGCAACAATTTGGCGGAACTATATAGAGTTAAGAAGGAGTTCAATAAAGCAGAACCTTTGTATTTGAAG GCCATAAATGTACTGGAGGAAGCATTTGGTCCAGAAGATGTGCGTGTAGGTGCGGCTCTTCACAACATGGGGCAATTCTATCTTGTGCAGCGGAAACTGG AAGAAGCCTGTAAATGCTACGAGATCAAGGGTCGCGTTCTTGGATTTAATAATCCAGACTATGCAGACACAATGTATCATCTTGGGACGGTGAGGTTTCT TATGGGTAAACAAATGGATGCTGAAGTTCTCATCCAGGATTCCATTAGGATAGCAGAGGACAGTGGACAAGGGGAATCGGCTACATGTATAAGGAGATTG CGTTATCTAGCCCAGGTTGTCACCCTATTATGTCCTATATATTTGAAGTCCAGCCGTCTTGTGGAAGCTGAAAATGTACAGAGAAAGGTTCTGCATATCA TGGAATTGTCAAAGGTGTTACTTCCATTTCCTCGTATCTTTTCATCTCTTTCAGTGCATCTAGAGGTTTTATTTCCATTTTCAAGAGATAAAAGGCTCAG AAAGAGCCTGCCGCTGGCGTATTGCGTCAAATTTGATGTCGATCTCATGGCACAGGGTTGGAAATCTATGGACACTTTGATGACAGCTCAAGGGCTAGTC CAGACCCTAGTGTCCGCTGGGAACTTCAGTGATGCACAAGAACTTCTTGAAATGTGCCTCGATGGTCAGAAAAGCTTACTTCCCGAGGACCATATTCAGG TTTGA
AA sequence Show only first row Show all	>Lus10020811 pacid=23140952 polypeptide=Lus10020811 locus=Lus10020811.g ID=Lus10020811.BGIv1.0 annot-version=v1.0 MQFQLLRRAAASLARRIEVPTQLATPSVKPLLVSSTSQSGRSIRANEFGFGGSTWGRNENRSLLWIIAAGQAAIFIGIDGNLVLADASVESNPKTELEET GEIGLQKIDDGSVVSNIHTSKWRVFTDSGRDFFLQAGIFSVASSVLGKLDNAEKLFISALNEAKEGFGEKDPHVASACNNLAELYRVKKEFNKAEPLYLK AINVLEEAFGPEDVRVGAALHNMGQFYLVQRKLEEACKCYEIKGRVLGFNNPDYADTMYHLGTVRFLMGKQMDAEVLIQDSIRIAEDSGQGESATCIRRL RYLAQVVTLLCPIYLKSSRLVEAENVQRKVLHIMELSKVLLPFPRIFSSLSVHLEVLFPFSRDKRLRKSLPLAYCVKFDVDLMAQGWKSMDTLMTAQGLV QTLVSAGNFSDAQELLEMCLDGQKSLLPEDHIQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10020811 [exp]	0	1
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10016661 [exp]	4.7	0.8825
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001101 [exp]	6.5	0.8826
AT4G12750			Homeodomain-like transcription...		Lus10016078 [exp]	15.9	0.8434
AT1G79540			Pentatricopeptide repeat (PPR)...		Lus10020852 [exp]	20.3	0.8608
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	21.6	0.8544
					Lus10000409 [exp]	22.8	0.8432
AT5G58410			HEAT/U-box domain-containing p...		Lus10026420 [exp]	26.7	0.8532
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10033928 [exp]	27.9	0.8584
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	30.9	0.8453
AT4G12750			Homeodomain-like transcription...		Lus10012302 [exp]	31.9	0.8501

Compare expression of checked genes

Lus10020811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.