Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37630 983 / 0 EMB2656 EMBRYO DEFECTIVE 2656, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004038 [exp] 1719 / 0 AT5G37630 1102 / 0.0 EMBRYO DEFECTIVE 2656, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G085500 [exp] 1232 / 0 AT5G37630 1050 / 0.0 EMBRYO DEFECTIVE 2656, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020813 pacid=23140801 polypeptide=Lus10020813 locus=Lus10020813.g ID=Lus10020813.BGIv1.0 annot-version=v1.0 ATGGAGGCCGACGACGAAGAGAGGATGCAACTTTGCCGTAAAATCGCCAAAATCCTCGACGAAACAAAGACATCAAACGCCACTCACATCCGAAAGCTGA AAGACCTCTCTGCCGTCCTGTCAAAGTCCCCGTCTCCTCGCCAGTTCGCGGCTGCATTCTGCAGGACTCTGACTCCTCTCTTCTGCATCCAGCGCCGGAC TTCCTCCGCCGAGCGCGTTGTCAGGTTTGTCTCCACCTTCGCCGGCGCCCAGGCGTCTGGTAGAGACTCCGGCTGCGATGAATTTCTCGAGGAGTTGCTC AGGTTCTTACTAACTGCTTCTGCCGCCGCCAATAAGACCGCCAGGTTTAGGGCCTGTCAGATGATATCTGAGATAATTATGCGGCTGCCTGATGATGCCG AAGTAAGTGATGATGTATGGGATGAGGTTATTGAATGTATGATGTTGCGTGTTCGAGACAAGGCTTCTGTTATTTGTACATTTGCTGTTAGAGCTCTTTC CAGATTCGTAAACGATGCTGAGAATAGTGACATCCTTAATATGCTTCTGGAAGTGCTTGAACTGGAGCAAAGTGCAGAAGTTCGTAAAACAATTCTGTTA GCTTTGCCTCCTACAAATGCAACCTCACTTGTGATTGTTGATTGCACCTTAGATGTGAGTGAATCAGTTCGCAAAGCTGCATACTCTGTTCTTGCTAACA AATTTCCACTGCATAGTCTCAGCATTAAGCTGAGGACACTGATTCTTCAAAGAGGACTTGCTGATCGTTCCATCATTGTTTCAAAGGAGTGCCTAAAGCT GCTGAGAGATGAGTGGCTTTCTAAGTGCTGCAATAATGATCCTACAGAACTTCTAAAGTATTTGGATGTTGAGACTTATGAGTTGGTTGGAGAAGCTGTG ATGGATGCTTTGCTGAAAGAAGGTTCAATTTTATTTGATAATCAGAGCATCCAAGAGTACATTGTATATACCGCTGGTGAAAATGAAGATTCACCTCCAA ATATTCAGTTGATGGAACCAGAGTCGGCTCTTTATTGGAAAACTGTGTGCAGGTTCTTACAGAGCAAGGCACAAGCAAAAGGCTCTGATGCTGCTGTAAC AACGGGTACTGAAGCTGCAGTTTATGCCGCTGAGGCTTCAGACAGTAATGACCTTCTCGACAGAATACTTCCAGCTACAGTTTTTGATTATGTAGCTCTG GTCAAAGCTCATATAGATGCTGGAGCAAACTTCCGTTTTGCATCTCGACAGCTGCTGCTACTTGGTACCATGGTGGATTTTTCTGATTCCACATGCAGAA AGGTAGCTAGTGCTTTCCTTCAAAACCTGTTGCAGAGGCCCTTAGATTTTGAAACTGATGAGACTGGAAATGAAGTCGTCATTGGAGATGGCTTAAACCT GGGTGGTGAAAAAGATTGGGCTGACGCTGTAACCAGCTTGGCAAAACAAGTTCATTCAGGAATTGGAGAGATTGAAAGTGCTTTTCTTGTGGTTCTAGAA GAACTTGTCAGGCCTTGCCGGGAGAGGACAGCTGATTTTAAGCAGTGGATGCATTGCCTTTCTGTCACAGGTCTTCTTTTGCAAAATACAAAGTCGTTTC ACCTGCTTCAAGGACAAGCTATCCAACCATCTGAATTGCTGCAGTCTTTGTTACTCCCTGCGGCAAAACATGTTCACTTAGATGTGCAGAGAGTTTCGAT TCGATGCCTTGGTCTTTTTGGCTTGTTGGAGAAGAAGCCAAGTGAAGATGTGCTGAAGCAGTTAAGGGTTTCCTTTATAAGGGGTCCTTCTCCTATCAGT GCAATGGCATGCAAAGCTGTAATGGACCTTGCTCTCTGGCATGGTCCTCATAACGTCGATAGTGCCCTGGGAAGCGGTGATGCATCTCCATCGGAGGGGA TCAAAATGGAATTCAATCCTGTGAACTTCCTTGATGCTGATGATAATACCGATGTCGGGTTTCTAGACCTTTTGTATGCCGGTCTTGACAGAAATGATTG GGGGGAAGCAGTAGAAAGTGATGAAAGCGAGATTGTGCGAGCTGTTCTAGGTGAAGGATTGGCGAAGATTCTTCTCCTCAGTGACAATTATACAACTATA CCGTCTTCTTTACACCCTCTACTCTTTGCGAAGCTTATTGAACTATATTTTAGTGACCAAACTAATGACTTGCAGAGGCTAAAACAGTGTTTATCTGTTT TCTTTGAGCACTACCCTACCATTTCAGCTAATCATAAGGCAATTATGCACGCAATGTGGCCAGCTGTTTTTGGAAATTCTGGAGGAAGTTCTGTTGTGGT ATCTAACTTGCGAAAACGTGCAATCCAAGCATCACGGTTTATGCTACAGATGATGCAGGCTCCATTGTATGTCTTAAACAATGAGACTGAGAACGGAGAG AGTGGTACTGGATCAGCAGAAAATACGAATCAAACGCCAGAGCCTACACTAGAATGTAGAGAGGAAGGACTCGCAGTGCGCATAGCCACAGAGTTGGCCA GCTTCACAGGGAAGAGAACAGCTGCAGAGAAGGCATACATATCTGCACTCTGCAGAATACTCGTCCTGATCCAGTTTAGGATATCAGGGCAACACACAAT AAAGCTAATGAGACGACTTCTGAATCAACTGATTGGAAATGTACCACTAGATAAAGATGTCATGAAAGAACTGAAGCTGATGGCTGAACGTCTAAGTTCA ATGGATAGTCAACCAGAGGAGGAACTACCCCAAGATCAGGCCAATCTTATATTCGGTATACTGGAGGTGGAATTCAACTTGGACGCCAACATTCCTGCTG CTAGTGCTGCTCCTAGTTCTACAAACCAGCAGACGCCAGATTGTCGAGCGAGCCGACCAGTCCGGCCGAGGAGGAGAGCAAAGGACGACGAAGAAACCTC GTCGGAGGAAGAAACTTCATCGGTACCAGTCCCGGTAGCAGCTGCTGGCAGTAGCAGGTCGCAAAGGGCGAGCAAGACTGCTGCATTGTCCAAGCTCCAG GGAGTAACAGGTCGCAAGAAAGCTGCTGCGGCTAGGATTGAGGAGGAAGAAGAAGAAGACGAAGAAGATGATGAGTCAGACGTGACGTCAGAAGATGCTG ATGATGACAGTGATGACGGCTTGATCTGA
AA sequence Show only first row Show all	>Lus10020813 pacid=23140801 polypeptide=Lus10020813 locus=Lus10020813.g ID=Lus10020813.BGIv1.0 annot-version=v1.0 MEADDEERMQLCRKIAKILDETKTSNATHIRKLKDLSAVLSKSPSPRQFAAAFCRTLTPLFCIQRRTSSAERVVRFVSTFAGAQASGRDSGCDEFLEELL RFLLTASAAANKTARFRACQMISEIIMRLPDDAEVSDDVWDEVIECMMLRVRDKASVICTFAVRALSRFVNDAENSDILNMLLEVLELEQSAEVRKTILL ALPPTNATSLVIVDCTLDVSESVRKAAYSVLANKFPLHSLSIKLRTLILQRGLADRSIIVSKECLKLLRDEWLSKCCNNDPTELLKYLDVETYELVGEAV MDALLKEGSILFDNQSIQEYIVYTAGENEDSPPNIQLMEPESALYWKTVCRFLQSKAQAKGSDAAVTTGTEAAVYAAEASDSNDLLDRILPATVFDYVAL VKAHIDAGANFRFASRQLLLLGTMVDFSDSTCRKVASAFLQNLLQRPLDFETDETGNEVVIGDGLNLGGEKDWADAVTSLAKQVHSGIGEIESAFLVVLE ELVRPCRERTADFKQWMHCLSVTGLLLQNTKSFHLLQGQAIQPSELLQSLLLPAAKHVHLDVQRVSIRCLGLFGLLEKKPSEDVLKQLRVSFIRGPSPIS AMACKAVMDLALWHGPHNVDSALGSGDASPSEGIKMEFNPVNFLDADDNTDVGFLDLLYAGLDRNDWGEAVESDESEIVRAVLGEGLAKILLLSDNYTTI PSSLHPLLFAKLIELYFSDQTNDLQRLKQCLSVFFEHYPTISANHKAIMHAMWPAVFGNSGGSSVVVSNLRKRAIQASRFMLQMMQAPLYVLNNETENGE SGTGSAENTNQTPEPTLECREEGLAVRIATELASFTGKRTAAEKAYISALCRILVLIQFRISGQHTIKLMRRLLNQLIGNVPLDKDVMKELKLMAERLSS MDSQPEEELPQDQANLIFGILEVEFNLDANIPAASAAPSSTNQQTPDCRASRPVRPRRRAKDDEETSSEEETSSVPVPVAAAGSSRSQRASKTAALSKLQ GVTGRKKAAAARIEEEEEEDEEDDESDVTSEDADDDSDDGLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	0	1
AT5G25590			Protein of unknown function (D...		Lus10022116 [exp]	1.0	0.9785
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10004038 [exp]	2.0	0.9713
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10000854 [exp]	3.5	0.9558
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002895 [exp]	3.5	0.9643
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10004959 [exp]	3.7	0.9552
AT3G56370			Leucine-rich repeat protein ki...		Lus10025223 [exp]	4.5	0.9580
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10041515 [exp]	6.0	0.9582
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10031539 [exp]	6.2	0.9538
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10018975 [exp]	6.4	0.9431
AT4G36180			Leucine-rich receptor-like pro...		Lus10042177 [exp]	6.7	0.9549

Compare expression of checked genes

Lus10020813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.