Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37660 257 / 3e-85 PDLP7 plasmodesmata-located protein 7 (.1.2) AT2G01660 238 / 5e-78 PDLP6 plasmodesmata-located protein 6 (.1.2) AT1G70690 172 / 1e-51 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) AT3G60720 161 / 9e-48 PDLP8 plasmodesmata-located protein 8 (.1) AT2G33330 84 / 1e-18 PDLP3 plasmodesmata-located protein 3 (.1) AT1G04520 82 / 1e-17 PDLP2 plasmodesmata-located protein 2 (.1) AT5G48540 77 / 4e-16 receptor-like protein kinase-related family protein (.1) AT1G63550 74 / 8e-15 Receptor-like protein kinase-related family protein (.1) AT5G43980 73 / 1e-14 PDLP1, PDLP1A PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) AT1G63570 73 / 1e-14 Receptor-like protein kinase-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016710 [exp] 181 / 5e-55 AT2G01660 318 / 1e-108 plasmodesmata-located protein 6 (.1.2) Lus10010362 [exp] 124 / 8e-33 AT3G60720 259 / 7e-85 plasmodesmata-located protein 8 (.1) Lus10036497 [exp] 103 / 2e-25 AT3G60720 210 / 9e-67 plasmodesmata-located protein 8 (.1) Lus10014475 [exp] 91 / 9e-21 AT1G04520 391 / 1e-137 plasmodesmata-located protein 2 (.1) Lus10023726 [exp] 91 / 1e-20 AT1G04520 389 / 2e-136 plasmodesmata-located protein 2 (.1) Lus10001052 [exp] 89 / 2e-20 AT5G43980 234 / 1e-75 PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) Lus10006752 [exp] 72 / 2e-14 AT5G48540 100 / 1e-24 receptor-like protein kinase-related family protein (.1) Lus10018377 [exp] 71 / 2e-13 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018380 [exp] 70 / 3e-13 AT4G05200 324 / 2e-104 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086000 [exp] 290 / 3e-98 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2) Potri.017G130800 [exp] 285 / 4e-96 AT5G37660 314 / 1e-107 plasmodesmata-located protein 7 (.1.2) Potri.010G108100 [exp] 240 / 2e-78 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.008G133500 [exp] 233 / 2e-75 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.014G067000 [exp] 160 / 1e-47 AT3G60720 306 / 8e-105 plasmodesmata-located protein 8 (.1) Potri.002G145400 [exp] 137 / 1e-38 AT3G60720 243 / 8e-80 plasmodesmata-located protein 8 (.1) Potri.002G257300 [exp] 105 / 1e-26 AT1G04520 243 / 2e-79 plasmodesmata-located protein 2 (.1) Potri.010G065800 [exp] 87 / 9e-20 AT1G04520 337 / 2e-116 plasmodesmata-located protein 2 (.1) Potri.008G171700 [exp] 86 / 3e-19 AT1G04520 349 / 3e-121 plasmodesmata-located protein 2 (.1) Potri.002G249600 [exp] 85 / 4e-19 AT5G48540 256 / 7e-86 receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10020814 pacid=23140950 polypeptide=Lus10020814 locus=Lus10020814.g ID=Lus10020814.BGIv1.0 annot-version=v1.0 ATGGAAACTCGCCGCCGCCACCACCCCTTCCTCCTGCTCATCCTCCTCCTCCTATCCACCACCGCTACCGCCGACGACAGAAAAGACAGCTTCCTCTACG GAGGATGCACCCAACAAAAATACACTCCGCTCTCCCCCTACGAGTCAAACCTAAACTCCCTCCTCACCTCCTTAGTCAACTCCGCCACCTACTCCTCCTT CAACAAGTTCACCATCCTCGGATCCGACGTCGTGTACGGCCTCTACCAGTGCCGCGGCGACCTATCCATGCCCGACTGCGCCACCTGCGTCGCCGCAGCC GTCTCCCGCTTCTCCTCCCTCTGCCCGCAGGCCGCCGGCGCCGCCGTCCAGCTCCAGGGCTGCTACGCCAAGTACGACAACGCCACCTTTTTGGGGGTCC AGGACAAGACCGTGGTGCTCAAGAAGTGTGGGCCCTCCGCGGGGTACGACGCTGACGTGGCGTCGTTGAGGGATGTCGTGCTGTCCGGGCTGGGTGGTCG GACCGGGGCGTATTATCGGGTGGGTGGGTCGGGTCGGGTGCAGGGATTGGCTCAGTGCCTTGGGGATCTGAGCGTCGGGCAGTGCCAGGATTGCTTGGGG GAGGCGATCGGACGGCTGAAAACGGAGTGCGGGAATGCCGGTTTTGGGGATATGTTTTTGGCCAAGTGTTATGTGAGGTATTCGACCAGCGGTGGGGCCC GGATGGGATCTAGTGGTAATTATGGGAATAATAACTATGGCTACAACAGTAACAAGCCTCCTGGGAAATCTACAAACGAGGGGGAGAAGACATTTGCAAT AATAATCGGGCTATTAGCAGGAGTGGCTCTACTTATAATTTTTCTTACTTTCATCAGGAAAATAGCTTGCGGTGGACATGGTAAATAA
AA sequence Show only first row Show all	>Lus10020814 pacid=23140950 polypeptide=Lus10020814 locus=Lus10020814.g ID=Lus10020814.BGIv1.0 annot-version=v1.0 METRRRHHPFLLLILLLLSTTATADDRKDSFLYGGCTQQKYTPLSPYESNLNSLLTSLVNSATYSSFNKFTILGSDVVYGLYQCRGDLSMPDCATCVAAA VSRFSSLCPQAAGAAVQLQGCYAKYDNATFLGVQDKTVVLKKCGPSAGYDADVASLRDVVLSGLGGRTGAYYRVGGSGRVQGLAQCLGDLSVGQCQDCLG EAIGRLKTECGNAGFGDMFLAKCYVRYSTSGGARMGSSGNYGNNNYGYNSNKPPGKSTNEGEKTFAIIIGLLAGVALLIIFLTFIRKIACGGHGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	0	1
AT3G16330			unknown protein		Lus10038274 [exp]	1.0	0.9610
AT1G52140			unknown protein		Lus10025828 [exp]	2.0	0.9364
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10029787 [exp]	2.8	0.9315
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	5.8	0.9051
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Lus10011868 [exp]	5.9	0.9284
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	6.2	0.9319
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10029458 [exp]	6.5	0.9099
AT2G39450		ATMTP11	Cation efflux family protein (...		Lus10040318 [exp]	6.9	0.9132
AT1G49230			RING/U-box superfamily protein...		Lus10005818 [exp]	6.9	0.9265
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10032719 [exp]	6.9	0.9058

Compare expression of checked genes

Lus10020814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.