Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37670 162 / 2e-52 HSP15.7CI HSP20-like chaperones superfamily protein (.1) AT1G59860 102 / 3e-28 HSP20-like chaperones superfamily protein (.1) AT1G07400 100 / 1e-27 HSP20-like chaperones superfamily protein (.1) AT1G53540 99 / 5e-27 HSP20-like chaperones superfamily protein (.1) AT5G59720 86 / 4e-22 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT3G46230 84 / 2e-21 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT2G29500 84 / 4e-21 HSP20-like chaperones superfamily protein (.1) AT4G10250 76 / 1e-17 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT5G12020 58 / 3e-11 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G12030 57 / 7e-11 AT-HSP17.6A heat shock protein 17.6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004039 [exp] 204 / 3e-69 AT5G37670 150 / 3e-48 HSP20-like chaperones superfamily protein (.1) Lus10009085 [exp] 87 / 3e-22 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 81 / 9e-20 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10040723 [exp] 80 / 1e-19 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10000932 [exp] 81 / 2e-19 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 81 / 2e-19 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 80 / 2e-19 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 78 / 6e-19 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1) Lus10016458 [exp] 78 / 7e-19 AT2G29500 214 / 3e-72 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130700 [exp] 199 / 1e-66 AT5G37670 160 / 1e-51 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 111 / 7e-32 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 103 / 5e-29 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 101 / 3e-28 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.010G175200 [exp] 99 / 3e-27 AT1G53540 107 / 5e-30 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 99 / 6e-27 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 98 / 1e-26 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 96 / 7e-26 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 94 / 3e-25 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 94 / 4e-25 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10020815 pacid=23140873 polypeptide=Lus10020815 locus=Lus10020815.g ID=Lus10020815.BGIv1.0 annot-version=v1.0 ATGGCGGACGGATTCTTCTGGCACCCCTTAGGCCGCATGTTCTTCAGCCCACCCATCTTGAGGGACTGGTCCGGCTCAACTGCTTTAATGGACTGGATCG AGTCACCAACTGCCCACATCTTCAAGATCAACGTCCCAGGGTTTAGCAAGGAGGACATAAAAGTGCAATTGGAAGAAGGGAACGTACTACACATCAGCGG AGGGGGAGGAGGCGGCGAGAAGAGAGACGACAAGAAGGACGCCGTGTGGCACCTAGCGGAAAGAGGGGCAGCGAAGGGCGGTGGATTTTCTCGGGAGATA GCGCTGCCGGAGAGTGTGAAGGTCGATCAGATTAAGGCTCAGGTTGAGAACGGAGTTCTGACTATTGTTGTTCCCAAGGATAATTCGGCTAAGCAGCCTA AAGTGAGGAACATCGCCATATCTAGCAAGCTCTGA
AA sequence Show only first row Show all	>Lus10020815 pacid=23140873 polypeptide=Lus10020815 locus=Lus10020815.g ID=Lus10020815.BGIv1.0 annot-version=v1.0 MADGFFWHPLGRMFFSPPILRDWSGSTALMDWIESPTAHIFKINVPGFSKEDIKVQLEEGNVLHISGGGGGGEKRDDKKDAVWHLAERGAAKGGGFSREI ALPESVKVDQIKAQVENGVLTIVVPKDNSAKQPKVRNIAISSKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10020815 [exp]	0	1
AT1G07400			HSP20-like chaperones superfam...		Lus10040722 [exp]	2.2	0.9455
AT2G29500			HSP20-like chaperones superfam...		Lus10016458 [exp]	2.4	0.9410
AT4G02450			HSP20-like chaperones superfam...		Lus10000340 [exp]	4.5	0.9185
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10022322 [exp]	5.5	0.9204
AT2G29500			HSP20-like chaperones superfam...		Lus10040723 [exp]	5.7	0.8577
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10010189 [exp]	7.6	0.8600
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10018387 [exp]	9.2	0.9155
AT5G35320			unknown protein		Lus10011963 [exp]	9.9	0.9125
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	12.4	0.9162
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10041207 [exp]	13.0	0.9105

Compare expression of checked genes

Lus10020815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.