Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58060 442 / 8e-140 RNA helicase family protein (.1) AT1G58050 341 / 4e-103 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012695 [exp] 489 / 6e-172 AT1G58060 171 / 7e-48 RNA helicase family protein (.1) Lus10012694 [exp] 87 / 4e-20 AT1G58060 72 / 1e-15 RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G222900 [exp] 556 / 0 AT1G58060 1757 / 0.0 RNA helicase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020816 pacid=23177962 polypeptide=Lus10020816 locus=Lus10020816.g ID=Lus10020816.BGIv1.0 annot-version=v1.0 ATGCCTCCGAAGAAGAAGCCGCCGCCGCCGAAGCGGAGCACGAAATCAAAATCCCAGTCCCAATCATCGAGCTCGTCGGGTCCGAAGCTGCAAATATCAG CTGAGAACGAGAACCGTCTTCGTCGTCTATTGCTCAACTCTGGCCAGTCTGCCCAGTCTTTTCCGGTGGCAGCATCGGTTGAAGACAATCTCTCCAAAGC TCAAAAGGCGAAGAAATTGACGGCCATTTACGAGGGCCTCTCTTGCGAAGGGTTCTCAGACAATCAAATTGAGCTCGCTCTGTCTTCTCTCAAGGACAAT GCTACGTTCGAGGATGCTCTTGATTGGTTGTGCTTGAATATACCGGGAAATGAGCTCCCTCTGAAGTTTTCTAGCGGAAACTCGCAGCAGGATGGAGGTT CTGTCGGTGTTATATCAACTGCACGCGAGGGCTATGTTCCTGTGGATGATTCTACCAGAAAGAATGAGGAGGATCTGCAAAATAATGCTTTTAAAATCAA AGAAAGAAAAAGTGAGGAAACCCTAGATTCATGCAAGCAATCACAGGCTGATTGGATTCGGCAATATATGGAGCAGCAGGAAGAGGATGATGACAGAACT TGGGAGGATGATGCATTTGATCCAAGTATTACCCATAAGGATCCTGAACCACGGTCATATGATGTCATTGCGAAAGATTACTATGCAGCCAGAGTTGAAG CTGCAAAAGCCAAGGAGAGCGGCGACAAGAAAAGCCAGGAACAAGCAGGCCATATCATCCGCAAACTCAAGCAGGAATTATCTGCTCTAGGACTTTCAGT TGATACCTTGTCCCAAGAGTTTGCTCATCAGTCTCTCAGCATGCCCGAGGGCTCATATACTCCTGCTGTGGAACAGCTGGAAGCAACCCATGTTGATTCA GAAGATTCGTCTCTCCCAATTTGGCCAGTGGAAGGGTCATCAGTATGTGAAAACAATATCATTTGCTCAAGCTACACCGAGACCCCATCCCGACCTGTAT CGTCTAATGCACTTGATCAGCAAAAAGATGACTTGGGTAATGAGTCAGGAGAAGTGGAACTTGGTGATTTCTTTTTAGAAGATTCCGCACCTAAAGAATT GACGGCTGCTGAAGTATTGGAATTACAGAAAAATGAAAGAATGAAAGAATTATGCAGCGGGAAGAATCTGGAAAAATTAGATGGTATTTGGAAAAAGGGA GATCCTCGAAAGATTCCCAAAGCGGTTCTCCACCAGCTTTGTCAAAAATCAGGTTGGGAAGCACCTAAATTTGATAAAGTACATGAGAAAAGGGAAGGCT TTTCTTATTCTGTTAGTGTATTACGAAAAGCTAGTGGGAGGGGCAAAAACAGAAAGGCTGGTGGCTTGATTACTATTCGGCTTCCCGACTCGGATGAAGC ATTTGATTCTGTTGAGTTTCGTATGGTGGGCTGGGCGTGGATGGGGTTGGAATATTATTTGTCTGATCCATACCTTGGGGTTCAATCTCAGGATGCACAG AACACGGTGGCTGCATTTGCTCTTGATCAACTCTTTCCTGATTATCCAATTCATCTGGCAATTGCTGAGCCTTATGATTCACTTGTACTGAAGTGGAAAG GGGGATTGCCAAGTGGAGTTGAAACCAAGGTAGAAGACAGAAGGGCTGGTTTTGTGGATCAATTATTGAGTTCGAATGGTTCCAGTTCAAATGCATTTAT TGCAACCAATATATTGACAGAAACATTGAATATGGCTGGAAAAACTAACAGTCTGAGTGATTCTGTCACCGATCTGGTAGCAAGAAGTAAGCACTTTTAT TATGCAGTACTCTTACGCGATGTACATTTCTGGTTTATCTAG
AA sequence Show only first row Show all	>Lus10020816 pacid=23177962 polypeptide=Lus10020816 locus=Lus10020816.g ID=Lus10020816.BGIv1.0 annot-version=v1.0 MPPKKKPPPPKRSTKSKSQSQSSSSSGPKLQISAENENRLRRLLLNSGQSAQSFPVAASVEDNLSKAQKAKKLTAIYEGLSCEGFSDNQIELALSSLKDN ATFEDALDWLCLNIPGNELPLKFSSGNSQQDGGSVGVISTAREGYVPVDDSTRKNEEDLQNNAFKIKERKSEETLDSCKQSQADWIRQYMEQQEEDDDRT WEDDAFDPSITHKDPEPRSYDVIAKDYYAARVEAAKAKESGDKKSQEQAGHIIRKLKQELSALGLSVDTLSQEFAHQSLSMPEGSYTPAVEQLEATHVDS EDSSLPIWPVEGSSVCENNIICSSYTETPSRPVSSNALDQQKDDLGNESGEVELGDFFLEDSAPKELTAAEVLELQKNERMKELCSGKNLEKLDGIWKKG DPRKIPKAVLHQLCQKSGWEAPKFDKVHEKREGFSYSVSVLRKASGRGKNRKAGGLITIRLPDSDEAFDSVEFRMVGWAWMGLEYYLSDPYLGVQSQDAQ NTVAAFALDQLFPDYPIHLAIAEPYDSLVLKWKGGLPSGVETKVEDRRAGFVDQLLSSNGSSSNAFIATNILTETLNMAGKTNSLSDSVTDLVARSKHFY YAVLLRDVHFWFI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58060			RNA helicase family protein (....		Lus10020816 [exp]	0	1
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10031042 [exp]	1.4	0.9617
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	1.7	0.9652
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10000108 [exp]	3.2	0.9308
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10022115 [exp]	5.9	0.9367
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10004730 [exp]	6.3	0.9400
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	9.2	0.9456
AT4G38760			Protein of unknown function (D...		Lus10012168 [exp]	10.2	0.9331
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10007793 [exp]	11.2	0.9392
AT1G27590			unknown protein		Lus10028228 [exp]	11.8	0.9275
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015202 [exp]	15.0	0.9267

Compare expression of checked genes

Lus10020816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.