Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25270 266 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G68170 231 / 6e-73 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 219 / 5e-68 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 215 / 3e-66 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 210 / 2e-64 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G30340 208 / 5e-64 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G01070 201 / 5e-61 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G64700 195 / 4e-59 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 196 / 8e-59 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 194 / 2e-58 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020819 [exp] 508 / 0 AT1G25270 262 / 6e-85 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10012691 [exp] 496 / 2e-176 AT1G25270 259 / 1e-83 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10012693 [exp] 422 / 1e-143 AT1G25270 141 / 7e-37 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020987 [exp] 324 / 1e-108 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 228 / 8e-71 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 221 / 2e-68 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 217 / 8e-67 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 213 / 2e-65 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 215 / 1e-64 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108600 [exp] 333 / 2e-112 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307900 [exp] 258 / 1e-83 AT1G25270 254 / 2e-82 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 220 / 4e-68 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 213 / 1e-65 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G182700 [exp] 212 / 2e-65 AT4G01440 298 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 211 / 9e-65 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G149000 [exp] 209 / 4e-64 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 209 / 5e-64 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 207 / 5e-63 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G165600 [exp] 204 / 2e-62 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10020817 pacid=23177918 polypeptide=Lus10020817 locus=Lus10020817.g ID=Lus10020817.BGIv1.0 annot-version=v1.0 ATGGAGAAGTTTCGAGATGTGGTGGATGGATCGAAGCCATTCATGATCATGGTTTTGATTCAAGTTTCAAACACAGTGATGAATGTTCTGTACAAACTAG CTCTGAACGATGGGATGAATCTCAGAATCCTAATTGCTTACAGACTCGCCTTTGCTACTGTCTTCATCACCCCACTTGCTGTAATCCTTGAAAGAAAGAA ATGGCCAAAGTTCTCATGGGTTCTCCTCTTTCAAGCTTTTCTTTCTGGCCTTTTCGGGGCAACACTATCGCAAACTCTATATGCAGAGAGCTTGGCCTTG ACTTCTCCAACATTTGCTGCCGCCATTAGCAACCTTTCTCCTGCCATTACCTTCACATTGGCCGTTTTATTTAGGTTAGAGAGCTTCGAGCTAACTACGA GAGTTGGGAAGGCCAAAGCAGTGGGAACATTGATCGGAGTCGTTGGTGCGACAGTGCTGACTTTCTACAGAGGCGTAGGGTTCAACAACTTGTCAATAAG CATCCAACTGCTGAAACCAAACCATGAAGAAAATCACAAGGATGAGTACCAGACAGGCAGCCACAGTTTCATGGGTCTGGTTATGGCATTGGGAAGTTGC ATTTCTCTTGCAATCTGGTTAATAATGCAGAGTAAAATAGGCAAGACAGACCAATGCAGCTGCCATTACTCAACAACAGCTCTTATGTCGTTAATGGCGT CGATCCAGACCGCTGCTTTCTGCCTGTGGATGGAGAGGGATTGGACCGAATGGAAGCTTGGATTGAACATCAGACTTCTTGCAGTTGCTTTCGCAGGGAT TATTGCTTCAGGATTGGTCACAACAACCATTGTTCGAATCGTGGAAACCAGAGGACCCGTATTCGCGTCTGCTTTCAACCCTTTGTCACTTGTGTTTGTG GCCATCATAAGCTGTTTGATGCTAGGTGAAGTGTTGCACATGGGAAGTGTAATTGGAGGAATCTTGATCGTATGTGGATTGTACTTGGTGCTTTGGGGCA AAGTTAAAGAATTCGAACCCAAGTCGGATGGATTTGAGAAGAGCACCGGAGATGTTATTAGTGTTCATGGACGATCAACTTCATTGGATGCTGGTTCAAC AAATCTTGAATGGAGATTTTCAGTACCAAACACGACATAG
AA sequence Show only first row Show all	>Lus10020817 pacid=23177918 polypeptide=Lus10020817 locus=Lus10020817.g ID=Lus10020817.BGIv1.0 annot-version=v1.0 MEKFRDVVDGSKPFMIMVLIQVSNTVMNVLYKLALNDGMNLRILIAYRLAFATVFITPLAVILERKKWPKFSWVLLFQAFLSGLFGATLSQTLYAESLAL TSPTFAAAISNLSPAITFTLAVLFRLESFELTTRVGKAKAVGTLIGVVGATVLTFYRGVGFNNLSISIQLLKPNHEENHKDEYQTGSHSFMGLVMALGSC ISLAIWLIMQSKIGKTDQCSCHYSTTALMSLMASIQTAAFCLWMERDWTEWKLGLNIRLLAVAFAGIIASGLVTTTIVRIVETRGPVFASAFNPLSLVFV AIISCLMLGEVLHMGSVIGGILIVCGLYLVLWGKVKEFEPKSDGFEKSTGDVISVHGRSTSLDAGSTNLEWRFSVPNTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10020817 [exp]	0	1

Compare expression of checked genes

Lus10020817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.