Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60990 352 / 6e-119 Glycine cleavage T-protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012692 [exp] 504 / 4e-179 AT1G60990 509 / 2e-180 Glycine cleavage T-protein family (.1.2.3)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0289 [flax] [poplar] FBD PF01571 [flax] [poplar] GCV_T Aminomethyltransferase folate-binding domain
Representative CDS sequence Show only first row Show all	>Lus10020818 pacid=23177984 polypeptide=Lus10020818 locus=Lus10020818.g ID=Lus10020818.BGIv1.0 annot-version=v1.0 ATGGACATTGAAAGGAATGCGGAGGGAGTGACGGCAAACATACGAGCAGGACGGATCAGGTTGATAGGAGGTGGTTCCATCGAGGAATTGGAAGGGCGTG ATGAGGCAAAAGTTTCAGAAGATGGGATTATTGAAACAGGCAATGACGATGATGCGTTGGATGCCTTTTACAATGCTGTAGTGGAGAAATTTGCACATTT CCGTCTTGATCTTCAGATATCAGATCTCTCACACTTTGGACGGATAAGAGTGAGTGGAGATTATCGAATTCAGTTCCTCCACTACCAAAGTACAGCAGAT TTTGATATTCTTCTGGAGGGACAGGGATGTGATACAGTATTTGTTACACCAACAGCATGGACAATTGATATTGCACATGCTTGGAACATGATGAAGTTAC CAACAGAAAGAAACATGTCAGTGTCGTTATGGAGCAATTTGGAAACACTGTATTATATTTCTTCGTCTGGAAGACCAGTGTGGAGCTTAATCTCCATGAT CAAGGCATATATGTTTATTTGTGTAGATACATATTTTTTGCTGACAAAGTGGAAGTTGAAGACATCACAAAGCAAAACTAGCTTATTTACTGTAGCAGGG CCACGAAGCAACGAGGTAATGAACAGCCTGAATGTTGGAGATCTTGTGGGGCAGCCTTATGGCACACATCGTCATTATGCTGTCAATGGGATGCCCCTAA CCATAGGGGTTGGGAGTATCATCTCTGAAGAAGGATATACGTTGTTAATGTCCCCTGCTGCTGCTGGAACCGTCTGGAAATCCATATTATCACATGGTGC CCTTCCCATGGGAAGACCTGTCCCAGGTAAGGAGCTTACGAATGAATTCAATGTCTTGGAGGCTGGTCTCTGGAATTCCATCTCTCTAAACAAAGGATGT TATAAAGGACAAGAAACCATCGCTCGACTCGTAACATATGATGGTGTGAAGCAGAGACCATCATCACTTGTGATGGGAAAAAGACTGACGAGCTATACAT ATGGAACTGGAAGAGCAGGATCCAATGAACATTATGGATTAGGCTACATTAAGAAGCAGGAGGGGTCCAAGGGGAAGACTGTTGCTATCGGAACATTGGT TGAAGCTCGATTTCTTTCTCGGCAGGGTCCTCCATCAAAGAGCTCGAGCTCCTAA
AA sequence Show only first row Show all	>Lus10020818 pacid=23177984 polypeptide=Lus10020818 locus=Lus10020818.g ID=Lus10020818.BGIv1.0 annot-version=v1.0 MDIERNAEGVTANIRAGRIRLIGGGSIEELEGRDEAKVSEDGIIETGNDDDALDAFYNAVVEKFAHFRLDLQISDLSHFGRIRVSGDYRIQFLHYQSTAD FDILLEGQGCDTVFVTPTAWTIDIAHAWNMMKLPTERNMSVSLWSNLETLYYISSSGRPVWSLISMIKAYMFICVDTYFLLTKWKLKTSQSKTSLFTVAG PRSNEVMNSLNVGDLVGQPYGTHRHYAVNGMPLTIGVGSIISEEGYTLLMSPAAAGTVWKSILSHGALPMGRPVPGKELTNEFNVLEAGLWNSISLNKGC YKGQETIARLVTYDGVKQRPSSLVMGKRLTSYTYGTGRAGSNEHYGLGYIKKQEGSKGKTVAIGTLVEARFLSRQGPPSKSSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	0	1
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	1.0	0.9274
AT3G06790			plastid developmental protein ...		Lus10037488 [exp]	2.4	0.8681
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10003299 [exp]	2.8	0.8538
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	3.2	0.8825
AT2G40116			Phosphoinositide-specific phos...		Lus10009894 [exp]	7.3	0.7946
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	7.4	0.8480
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026377 [exp]	7.5	0.7784
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10007142 [exp]	7.7	0.8087
AT2G47830			Cation efflux family protein (...		Lus10009817 [exp]	7.7	0.7935
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10016439 [exp]	8.8	0.8036

Compare expression of checked genes

Lus10020818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.