Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25270 233 / 2e-73 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G68170 201 / 2e-61 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 199 / 4e-60 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 194 / 6e-58 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 182 / 1e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G30340 180 / 4e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 178 / 5e-52 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G39510 175 / 6e-51 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01440 174 / 6e-51 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G64700 174 / 1e-50 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012691 [exp] 700 / 0 AT1G25270 259 / 1e-83 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020817 [exp] 478 / 4e-169 AT1G25270 274 / 8e-90 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020987 [exp] 308 / 5e-102 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10012693 [exp] 289 / 1e-91 AT1G25270 141 / 7e-37 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 204 / 1e-61 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10031437 [exp] 198 / 1e-59 AT1G09380 438 / 8e-154 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 196 / 1e-58 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 195 / 2e-58 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 193 / 1e-57 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108600 [exp] 303 / 1e-100 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307900 [exp] 232 / 3e-73 AT1G25270 254 / 2e-82 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 204 / 1e-61 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 202 / 6e-61 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 192 / 2e-57 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G149000 [exp] 187 / 1e-55 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 186 / 6e-55 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 185 / 8e-55 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307800 [exp] 182 / 8e-54 AT5G64700 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.019G004100 [exp] 182 / 9e-54 AT5G64700 339 / 3e-115 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10020819 pacid=23177921 polypeptide=Lus10020819 locus=Lus10020819.g ID=Lus10020819.BGIv1.0 annot-version=v1.0 ATGGAAAACCTTGGAGGTTTCCTGCATGGATTGGGGCCACTGATGACCATGATTGTGATTCAAGCTGCATACACAGTGATGATTATTCTCTACAAACTAG CTTTGAATGATGGGATGAACCTCAGAATCCTGATTGCTTACAGACTCATCTTTGCTACTGCCTTCATCACCCCACTTGCTGTAGTCCTTGAAAGAAAGAA GTGGCCAAAGTTCACATGGAAACTCCTTTTCCAAGCTTTCGTTTTTGGACTTTTCGGGGCATCACTGCAGCAAACTCTATATGCAGAGAGTTTGGCCTTG ACTTCTCCAACATTTGCTACTGCCATGACCAATCTGTCTCCTGCTATTACCTTGTCATTGGCCGTTCTATGCAGGTCGGAGAGGTTGCGGCTAAAGACCA GAGTAGGACAGGCAAAAGCAGCAGGAACATTGATCGGAGTTGCTGGTGCGACGGTGATGACTTTCTACAAAGGTGTAGAGTTGAAGGGTTTGTCAACAAA CTTTCAACTGATGAGATTAAACCATCAACATCACAACGATCAGCACCAGACAGCCATCAGCAACGTCCTGGGCTTGATTACTGGATTGGGAAGTTGCATC TCTTATGCAATCTGGTTAATAATGCAGAGTCGAGTCGGCGAGAAATACCCATCGACCTGCCATTACACAACCACAGCTCTTATGACGTTCATGGCCTCGA TTCAGACGGTTGCTTATTGCCTGTGGGCGGAAAGGGATTTGAGCCAGTGGAAGCTGGGATGGAACGTCAGACTTCTTGGATCTGCTTTCTCGGGGATTGT TGCTTCTGGACTGGCGATGATAGCCATCGTTCAGATTGTCGAGATAAGAGGCCCCGTGTTCACATCTGCTTTTAACCCCCTGTCGCTCGTGTTTGTGGCT ATCATAAGCTGTTTGATGCTCGGTGAAGTCTTGCATCTGGGAAGCCTACTCGGAGGAATCCTGATCGTGTGCGGATTGTACTTGGTGCTTTGGGGTAAGG TCAAAGAGTTCGAACCGAAGCCAGATGGATTGGAGAAGGAAACCAGACTAGTTATAACCGTTGATGCCAAGTCAACTTCACCTGATGCTGGTTCAATATC TCTGCCAGTTCCAAACTTGACACCATCCGAAAATCGGAAAATGGAAGACCAAACTATAGTGCTGTAA
AA sequence Show only first row Show all	>Lus10020819 pacid=23177921 polypeptide=Lus10020819 locus=Lus10020819.g ID=Lus10020819.BGIv1.0 annot-version=v1.0 MENLGGFLHGLGPLMTMIVIQAAYTVMIILYKLALNDGMNLRILIAYRLIFATAFITPLAVVLERKKWPKFTWKLLFQAFVFGLFGASLQQTLYAESLAL TSPTFATAMTNLSPAITLSLAVLCRSERLRLKTRVGQAKAAGTLIGVAGATVMTFYKGVELKGLSTNFQLMRLNHQHHNDQHQTAISNVLGLITGLGSCI SYAIWLIMQSRVGEKYPSTCHYTTTALMTFMASIQTVAYCLWAERDLSQWKLGWNVRLLGSAFSGIVASGLAMIAIVQIVEIRGPVFTSAFNPLSLVFVA IISCLMLGEVLHLGSLLGGILIVCGLYLVLWGKVKEFEPKPDGLEKETRLVITVDAKSTSPDAGSISLPVPNLTPSENRKMEDQTIVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10020819 [exp]	0	1
AT1G55200			Protein kinase protein with ad...		Lus10040097 [exp]	9.8	0.7691
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	17.2	0.7274
AT1G17750		AtPEPR2	PEP1 receptor 2 (.1)		Lus10032945 [exp]	20.1	0.6931
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10030365 [exp]	21.0	0.6939
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	21.6	0.7389
AT1G51340			MATE efflux family protein (.1...		Lus10027367 [exp]	23.4	0.7214
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10016320 [exp]	24.3	0.7392
AT4G37420			Domain of unknown function (DU...		Lus10016022 [exp]	25.3	0.7172
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	26.0	0.7166
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015285 [exp]	28.4	0.7133

Compare expression of checked genes

Lus10020819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.