Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61000 378 / 4e-128 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012690 [exp] 795 / 0 AT1G61000 410 / 1e-140 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G116200 [exp] 482 / 6e-169 AT1G61000 481 / 7e-169 unknown protein Potri.017G043000 [exp] 446 / 1e-154 AT1G61000 460 / 1e-160 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03800 [flax] [poplar] Nuf2 Nuf2 family
Representative CDS sequence Show only first row Show all	>Lus10020820 pacid=23177969 polypeptide=Lus10020820 locus=Lus10020820.g ID=Lus10020820.BGIv1.0 annot-version=v1.0 ATGTCCATCGCCGACATACTCTCGATACTCCAAGGTTCGGAAATCGCCGTCATCACTGAAAACGATCTGAAGAACCCTACTCAGGATCTCGTCATCAACA TCTACTCCCGTATCCTAGTCCATCTCGACGCTCTCAACGAAGAAGAGAATGAACAGTTCGACTTTGCTGCCCTAGAGCATCTAGAGAACCCTGACCACCA CATGGACTCCTTAAGAATCATGAATCTCTATGTCCGGATAAAGGAAGTTATGAGTCTGGCTCATTGCCCTGTGCAGATCAACTTCAAAGACCTTGTCAAG CCAGAAGGCAAGCGCACGGAGTTTTTCATCGGTACCATTCTTAATTTCTGCATTCACAAGGAGACGAAGATAAATTTGATTTCACCAATAGTGGAGGAGC TTACGATTCTTGATGAGCAGCGGAGGGAGTTGGAGAGTAGTAATGCTGAGAAGAATGTAGAAATCGATGGCTACGTTGCTGCCAGAGAAAACGAATTACC CGAAGTTCAGGAGTTGGAGGCTCAAGTCAAGGAATTGCATCAGACAATTGCCAACTTGAACAGTGAGCAGATGTCACTGAGAGCTAATTTTAGGAAGTTG AAGGAGAAAACTGCAGAGAAGGACGGGGAGTTGCTTGAGGGTTGCAGTGTTGAATTGCTGATGGTGACTTATCCATCTTCATTTTGGTTCTTAAACCAGA TTTCTAAGGCCGAATTTGATCTGGTGCAAAGCCTCCAGGAAAATGCAAGTTTACGTTCAAAAATTGTTCAGTCTCCAGACAAGCTGCAGAAAGCTCTAGA AGAGAAGAAATCAATTCGGGAGGAAGCAAGGAATGCTGAGAAGCAAGCACTGCAAACATTTCAGCAGAAGACTTCGATGCTTGAGGTGTATTCCAAGACT TCCAAGAAATTATCAAAGCTTCACTCGCAGATGCAGGCTATACATGAGCAGATGAATTCTGCTAAATCCCTTGAAAAGGACTTGAAGGCTTTGAAAGCGA AGATCAGTGACGATGAGATGATTGACAAGTCACTTGATGCAAAAATTGCTGAACGCCAAGCGAGAGCACAACAGCTGGCTGAGCAGAGAAACCGACTGGA GAAAGAAAGAGAGATCAAATTTGAAGAAGCCAACAAGGAATTGCGCAGCAAGCAGCTCGAAGTTGAGTCCAAGAAGCGCGATCTAGAAGCAAGGCAACAG AAAGTTGTGGCTATTCTTGGAGAGGCAGACGCCTTCAAATCAAAGGCCAAGATGATTCACGACAATGGAGTCGGCAAAGTTCAGGCCTTGACTAAAAAAA GTGAAGAGCTAGTGGAACAGTTTGATCAATATAAGAGCTCCATTAGTGATCTCATTGAGTCAGGGCTGTAG
AA sequence Show only first row Show all	>Lus10020820 pacid=23177969 polypeptide=Lus10020820 locus=Lus10020820.g ID=Lus10020820.BGIv1.0 annot-version=v1.0 MSIADILSILQGSEIAVITENDLKNPTQDLVINIYSRILVHLDALNEEENEQFDFAALEHLENPDHHMDSLRIMNLYVRIKEVMSLAHCPVQINFKDLVK PEGKRTEFFIGTILNFCIHKETKINLISPIVEELTILDEQRRELESSNAEKNVEIDGYVAARENELPEVQELEAQVKELHQTIANLNSEQMSLRANFRKL KEKTAEKDGELLEGCSVELLMVTYPSSFWFLNQISKAEFDLVQSLQENASLRSKIVQSPDKLQKALEEKKSIREEARNAEKQALQTFQQKTSMLEVYSKT SKKLSKLHSQMQAIHEQMNSAKSLEKDLKALKAKISDDEMIDKSLDAKIAERQARAQQLAEQRNRLEKEREIKFEEANKELRSKQLEVESKKRDLEARQQ KVVAILGEADAFKSKAKMIHDNGVGKVQALTKKSEELVEQFDQYKSSISDLIESGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61000			unknown protein		Lus10020820 [exp]	0	1
AT5G65120			unknown protein		Lus10016802 [exp]	1.4	0.9429
AT4G01270			RING/U-box superfamily protein...		Lus10018817 [exp]	1.4	0.9444
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Lus10000602 [exp]	5.5	0.9379
AT1G19080		PSF3, TTN10	TITAN 10, Partner of SLD5 3, G...		Lus10014848 [exp]	6.6	0.9001
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10036982 [exp]	7.5	0.9202
AT2G25100			Polynucleotidyl transferase, r...		Lus10008965 [exp]	10.7	0.8419
AT5G52800			DNA primases (.1.2.3)		Lus10014953 [exp]	14.5	0.8959
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10005874 [exp]	15.4	0.9127
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10042941 [exp]	16.3	0.9193
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016695 [exp]	16.6	0.8838

Compare expression of checked genes

Lus10020820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.