Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60890 891 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 877 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G09920 700 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT3G07960 530 / 3e-179 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G77740 524 / 2e-176 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT2G41210 517 / 1e-173 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G21980 516 / 3e-173 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G56960 509 / 2e-170 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G26420 415 / 6e-135 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT4G01190 205 / 5e-59 ATPIPK10 phosphatidylinositol phosphate kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012689 [exp] 1400 / 0 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10015456 [exp] 1091 / 0 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10001377 [exp] 1081 / 0 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10014408 [exp] 707 / 0 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10023909 [exp] 701 / 0 AT3G09920 1210 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10021505 [exp] 685 / 0 AT3G09920 1180 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10022606 [exp] 683 / 0 AT3G09920 1179 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10018200 [exp] 536 / 1e-180 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 533 / 9e-180 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211200 [exp] 968 / 0 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 951 / 0 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.006G121200 [exp] 681 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.005G172800 [exp] 537 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 537 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 529 / 3e-178 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.001G027900 [exp] 529 / 5e-178 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.003G196000 [exp] 526 / 9e-177 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.019G015768 [exp] 493 / 1e-164 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 488 / 1e-162 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10020821 pacid=23177942 polypeptide=Lus10020821 locus=Lus10020821.g ID=Lus10020821.BGIv1.0 annot-version=v1.0 ATGGTGGTGTTGAGGCAACTCATACTAGATGAGGATGTAAGGATTGGAAGGAAGGTCTTGCCAAATGGAGATGTTTACATTGGAGATTTCGAAGGACAAC TTCCCCAAGGCAAAGGCAGGTACATCTGGTCACAAGACGGCACAGTTTACGATGGAGAATGGGAAGAAGGCAAAATGACAGGAGATGGCCAAATGCTATG GGCAGCAGGAGCCAAGTACGAAGGTGAATTCTCTGGTGGCTACCTTCATGGCTCGGGAACCTTCACCCACGTAGATGGCTCCGAATATCGAGGCTGCTGG AGGATGAACATACGACACGGAATTGGTACCAAGAAGTACTCCAACTCGGATGTCTATGAAGGGTGTTGGAAAGAAGGTGTTCATGAAGGTAATGGTAAGT ACACTTGGAGCAATGGCAATGTATATGTAGGGAACTGGAAAAATAGTATCATGAACGGTAGAGGGATCATGAAGTTGATGAGTGGGGAAATCTTCGACGG TTCATGGTCGAATGGGCTCCGACACGGTTCCGGTGTTTGCAGGTTTGAAGATGGTGGGTTCTACTTGGGGATATGGACTAAAGGTTTGAAAGATGGGAAG GGTACATTCTATCCTGCTGGGACTAAACATCCTTCTTTGAAAACATGGTGTGAACTTCTTGGTTATGACGATATCGAGAGTAGCTTCCAGACATCGACGA CTACTGGGAAGCTGACGATTTCTGGACGGATGAGGAACAGGACACGGCGAACATCATTATCATCAAAGAAGAAGAGAGAGCCAAGTCATTCGGGGAGAGA GTTGATATTTCATGACTTGCCGAGTGTGCTGGCTCGAATCACGGAGGATGTCCATAGTGAGGTTGTGGATAATGACACTGCTACTACTGCTTATGAACGT GAGTACATGCAAGGAGTGTTGGTTATGGAGAAGATTCTGACTGCGGAGCCGTCAAGAAAGGCTAAGCATAAGAACAGGCTCAGTGTCAAAGATGGCAAGA CAAAGTCATACATTGGTATTTTCAGGAGGAGCCAGAGCTATTATCTGATGCTGGATCTGCAACTTGGTATCAGGTACATCGTGGGGAAGATGACACCAGT GCCAATACGAGAAGCTCGTCCTTCTGATTTCAGGGAGCGTGCTAGAATCCGCATGTACTTCCCTCGAAATGGGTCCCGATTCACGCCGCCTCACTACTCC TTTGATTTCTACTGGAAAGATTACTGTCCTATGGTCTTCAGGAACCTAAGAGAAATGTTCAAGTTAGATGCAGCTGATTACATGATGTCCATTTGTGGAG ATGATGGTCTGACAGAGATTTCATCTCCTGGGAAAAGTGGCAGCATCTTCTACGTTTCTCATGATGATAGATTTGTGATCAAGACCCTCAGTAAATCTGA GCTCAAGACCCTTCTCAGGATGTTACCACAATACTACGCTCATGTCGGAAGTTACGAGAACACCCTCATAACGAAGTTCTTCGGGGTTCATCGGATAAAA CTAAGAGGAGGACGAAAGGTGCGGTTTGTGGTAATGGGTAACATGTTCTGCACAGAGTTGAGAATTCATCGACGGTATGATCTAAAGGGCTCATCTCATG GAAGATACACACATAAAGATAAGATGAAAGAGGGTACTACCTTAAAGGACCTGGATTTGGATTATGAGTTTCACATGGACAAACTGCTTAGACAGTCCCT CTTCAAACAACTTCATCTGGATGCCAAGTTCTTAGAGTCTCAGAACATCATAGATTACAGCCTTCTCCTGGGGTTGCACTTCAGAGCGCCAGAGCCTCAA AAGGGGTTGATGTTAGTAACTCATGAGCCTAGCTTTGTCACCACTGCACCTGGTCCTCACATCAGAGGCAGCACCCTCAAAGCTTACTCCGTAGGCGAAA AAGAAGTCGACCTCTTACTTCCCGGAACTGGGAGATTGAGGGTCCAGTTAGGAGTGAACATGCCGTCTCAGGCGAACCGGAAGCTGCAGCAAGAAGAGGC CGATGATGGTTCGACCGAGAAAGAGGTAGATGAACTGTATGAGGTGTATGATGTGGTTCTGTACATGGGGGTCATCGACATACTGCAAGAGTACAATGCA AGGAAGAAAGCTGAGCATGCTTACAAATCAATGAGATTCGACTCTGTAACCATTTCGGTGGTCGAACCAGAGTTGTACTCAAACCGGTTCATTGATTCCT TGCTGAAAGTTTTTCCTGATACTAAACCTACTAGTACATAG
AA sequence Show only first row Show all	>Lus10020821 pacid=23177942 polypeptide=Lus10020821 locus=Lus10020821.g ID=Lus10020821.BGIv1.0 annot-version=v1.0 MVVLRQLILDEDVRIGRKVLPNGDVYIGDFEGQLPQGKGRYIWSQDGTVYDGEWEEGKMTGDGQMLWAAGAKYEGEFSGGYLHGSGTFTHVDGSEYRGCW RMNIRHGIGTKKYSNSDVYEGCWKEGVHEGNGKYTWSNGNVYVGNWKNSIMNGRGIMKLMSGEIFDGSWSNGLRHGSGVCRFEDGGFYLGIWTKGLKDGK GTFYPAGTKHPSLKTWCELLGYDDIESSFQTSTTTGKLTISGRMRNRTRRTSLSSKKKREPSHSGRELIFHDLPSVLARITEDVHSEVVDNDTATTAYER EYMQGVLVMEKILTAEPSRKAKHKNRLSVKDGKTKSYIGIFRRSQSYYLMLDLQLGIRYIVGKMTPVPIREARPSDFRERARIRMYFPRNGSRFTPPHYS FDFYWKDYCPMVFRNLREMFKLDAADYMMSICGDDGLTEISSPGKSGSIFYVSHDDRFVIKTLSKSELKTLLRMLPQYYAHVGSYENTLITKFFGVHRIK LRGGRKVRFVVMGNMFCTELRIHRRYDLKGSSHGRYTHKDKMKEGTTLKDLDLDYEFHMDKLLRQSLFKQLHLDAKFLESQNIIDYSLLLGLHFRAPEPQ KGLMLVTHEPSFVTTAPGPHIRGSTLKAYSVGEKEVDLLLPGTGRLRVQLGVNMPSQANRKLQQEEADDGSTEKEVDELYEVYDVVLYMGVIDILQEYNA RKKAEHAYKSMRFDSVTISVVEPELYSNRFIDSLLKVFPDTKPTST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10020821 [exp]	0	1
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	2.2	0.8566
AT5G62890			Xanthine/uracil permease famil...		Lus10004228 [exp]	4.2	0.8114
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10012689 [exp]	6.9	0.8094
AT3G01720			unknown protein		Lus10022320 [exp]	7.4	0.8012
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	8.5	0.8067
AT4G13630			Protein of unknown function, D...		Lus10007129 [exp]	9.2	0.7894
AT3G15470			Transducin/WD40 repeat-like su...		Lus10039933 [exp]	9.4	0.7859
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10022500 [exp]	11.4	0.7742
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10033194 [exp]	14.2	0.7448
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10036525 [exp]	19.9	0.7584

Compare expression of checked genes

Lus10020821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.