Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11040 161 / 6e-46 HSP40/DnaJ peptide-binding protein (.1) AT1G44160 140 / 1e-38 HSP40/DnaJ peptide-binding protein (.1) AT5G25530 128 / 3e-34 DNAJ heat shock family protein (.1) AT3G08910 121 / 8e-32 DNAJ heat shock family protein (.1) AT5G01390 116 / 6e-30 DNAJ heat shock family protein (.1.2.3.4) AT1G59725 115 / 1e-29 DNAJ heat shock family protein (.1) AT4G28480 111 / 5e-28 DNAJ heat shock family protein (.1.2) AT2G20560 109 / 3e-27 DNAJ heat shock family protein (.1) AT1G10350 105 / 9e-26 DNAJ heat shock family protein (.1) AT2G20550 102 / 3e-25 HSP40/DnaJ peptide-binding protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012688 [exp] 208 / 6e-68 AT1G11040 109 / 3e-29 HSP40/DnaJ peptide-binding protein (.1) Lus10029685 [exp] 142 / 1e-38 AT1G11040 257 / 1e-80 HSP40/DnaJ peptide-binding protein (.1) Lus10042725 [exp] 141 / 2e-38 AT1G11040 256 / 2e-80 HSP40/DnaJ peptide-binding protein (.1) Lus10025682 [exp] 137 / 7e-37 AT1G11040 241 / 4e-75 HSP40/DnaJ peptide-binding protein (.1) Lus10018152 [exp] 129 / 7e-34 AT1G11040 246 / 5e-77 HSP40/DnaJ peptide-binding protein (.1) Lus10015402 [exp] 117 / 3e-30 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10027803 [exp] 117 / 4e-30 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 117 / 5e-30 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10021961 [exp] 116 / 5e-30 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211800 [exp] 177 / 3e-53 AT1G11040 197 / 2e-59 HSP40/DnaJ peptide-binding protein (.1) Potri.002G081700 [exp] 149 / 4e-42 AT1G11040 253 / 1e-80 HSP40/DnaJ peptide-binding protein (.1) Potri.005G179400 [exp] 147 / 4e-41 AT1G11040 250 / 2e-79 HSP40/DnaJ peptide-binding protein (.1) Potri.011G057601 [exp] 125 / 4e-33 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 120 / 2e-31 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 120 / 2e-31 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 119 / 7e-31 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 117 / 2e-30 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 114 / 3e-29 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 113 / 9e-29 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020822 pacid=23177973 polypeptide=Lus10020822 locus=Lus10020822.g ID=Lus10020822.BGIv1.0 annot-version=v1.0 ATGGGAGAGAGTAGTTCTCCACATTCTCCATCGACACCACTTTACAAGCTTCTCGGAATGTCGAAAAGTGGTTCGTTTAAGGGACTATGTAGATCTCTTG TGAAAAGATGCCGTCTTGATTATTATAGCCCGAAATCGAAGAATGATGATGAAGGACAGTGTGGTTTCTTTCGAGAAACGAACGATACAACCAAGGTAAC CTCGAATGATGAAAAGGCTCCAGAGAAATCCAAGGAGTCAATCGTACAATCATCAAGTGGCGCAACCGCTACTACGTTGGCGTGCAACCTCGATAGTAGA CCATGTTCGTTGGCGACATCGAGAAGTACTAACTATTCGGTACAGAGATGCCTGCCCCCTTTGGTGTTTACAGCGTCGGCGATAACAAGAAAGCCTCCTC CTGTTGAAATGATAGTAGACTGCACTCTCGAAGAGCTGTTCCGAGGCCGTGTCAAGCGTATCAAAATCATTAGAGATGTTATAAAGAATGGGATATACAT GCAAGAAGAAGAAACTGTAAAGATCAAACTAACCCCGGGATGGAAGTCCGGCACCAAGATCACCTTCGAAGGGAAACCGCCCAATGACGACGATAAATCA GGCAGTAGTAGCCGCCTAATCCAAAGCGACGTGGTACTAGTAATCCAAGAAAAGCCACACCATTTGTTCACCAGAGACGGCGACAACTTGGTCTACGACG TTGACATCCCGTTGACAGACGCCCTCACCGGTTGTACCTTATCGGTGCCAATGCTCGGCAGGGACAACATGTGGTTGTCTTTCGCCGACGAAGTTATATG TCCCGGCTACGAGAAGGTGATTCGTGGCCAAGGGATGCCGGTCCCCGATGAGAAGGGCAAGAAGGGCGATTTCATCATTAGGTTTTCGGTCAGTTTTCGG ATGGATTTGAGCATGGAACGGCGGAGAAAAGCTTGTGAGATTTTGCAGGAATATTGCTAA
AA sequence Show only first row Show all	>Lus10020822 pacid=23177973 polypeptide=Lus10020822 locus=Lus10020822.g ID=Lus10020822.BGIv1.0 annot-version=v1.0 MGESSSPHSPSTPLYKLLGMSKSGSFKGLCRSLVKRCRLDYYSPKSKNDDEGQCGFFRETNDTTKVTSNDEKAPEKSKESIVQSSSGATATTLACNLDSR PCSLATSRSTNYSVQRCLPPLVFTASAITRKPPPVEMIVDCTLEELFRGRVKRIKIIRDVIKNGIYMQEEETVKIKLTPGWKSGTKITFEGKPPNDDDKS GSSSRLIQSDVVLVIQEKPHHLFTRDGDNLVYDVDIPLTDALTGCTLSVPMLGRDNMWLSFADEVICPGYEKVIRGQGMPVPDEKGKKGDFIIRFSVSFR MDLSMERRRKACEILQEYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10020822 [exp]	0	1
AT5G53480			ARM repeat superfamily protein...		Lus10014540 [exp]	5.5	0.7545
					Lus10026426 [exp]	5.7	0.8035
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10009926 [exp]	9.1	0.7741
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	11.9	0.7592
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	13.7	0.7592
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	15.3	0.7592
AT5G24230			Lipase class 3-related protein...		Lus10018097 [exp]	16.5	0.7240
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	16.8	0.7592
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	18.1	0.7592
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	19.4	0.7592

Compare expression of checked genes

Lus10020822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.