Plant FIBer expression Database

Lus10020823 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25630 382 / 4e-129 BGLU14 beta glucosidase 14 (.1)
AT5G42260 381 / 2e-128 BGLU12 beta glucosidase 12 (.1)
AT5G44640 377 / 7e-127 BGLU13 beta glucosidase 13 (.1)
AT2G44450 377 / 1e-126 BGLU15 beta glucosidase 15 (.1)
AT2G44480 370 / 5e-124 BGLU17 beta glucosidase 17 (.1.2)
AT3G60130 366 / 1e-122 BGLU16 beta glucosidase 16 (.1.2.3)
AT1G51470 337 / 5e-111 TGG5, BGLU35 THIOGLUCOSIDE GLUCOHYDROLASE 5, beta glucosidase 35 (.1)
AT1G47600 332 / 2e-109 BGLU34, TGG4 THIOGLUCOSIDE GLUCOHYDROLASE 4, beta glucosidase 34 (.1.2)
AT1G26560 332 / 3e-109 BGLU40 beta glucosidase 40 (.1)
AT5G24550 332 / 6e-109 BGLU32 beta glucosidase 32 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012687
[exp]
772 / 0 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2)
Lus10008503
[exp]
503 / 6e-176 AT2G44450 489 / 2e-169 beta glucosidase 15 (.1)
Lus10026057
[exp]
435 / 2e-149 AT2G44450 554 / 0.0 beta glucosidase 15 (.1)
Lus10031235
[exp]
405 / 2e-137 AT2G44450 590 / 0.0 beta glucosidase 15 (.1)
Lus10024065
[exp]
404 / 4e-137 AT5G44640 511 / 2e-178 beta glucosidase 13 (.1)
Lus10031251
[exp]
392 / 1e-132 AT2G44450 572 / 0.0 beta glucosidase 15 (.1)
Lus10031234
[exp]
391 / 3e-132 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2)
Lus10031808
[exp]
382 / 1e-128 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2)
Lus10036445
[exp]
370 / 1e-123 AT2G44450 506 / 8e-176 beta glucosidase 15 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G015100
[exp]
396 / 2e-134 AT5G44640 553 / 0.0 beta glucosidase 13 (.1)
Potri.003G211100
[exp]
395 / 7e-134 AT5G44640 569 / 0.0 beta glucosidase 13 (.1)
Potri.T085301
[exp]
395 / 7e-134 AT5G44640 575 / 0.0 beta glucosidase 13 (.1)
Potri.004G040700
[exp]
386 / 2e-130 AT5G44640 548 / 0.0 beta glucosidase 13 (.1)
Potri.001G227300
[exp]
372 / 8e-125 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2)
Potri.001G222900
[exp]
370 / 7e-124 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2)
Potri.004G109166
[exp]
369 / 2e-123 AT5G42260 525 / 0.0 beta glucosidase 12 (.1)
Potri.001G222904
[exp]
368 / 3e-123 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2)
Potri.001G223300
[exp]
368 / 3e-123 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2)
Potri.001G222704
[exp]
367 / 7e-123 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF00232 Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence
>Lus10020823 pacid=23177917 polypeptide=Lus10020823 locus=Lus10020823.g ID=Lus10020823.BGIv1.0 annot-version=v1.0
ATGGTGAAAGCTGCATCAACCCATTTGGTTGTTGCCATACTACTCATCGTGATTGAATTGGCGTTTGGAGCATTGAGTTCGTCGAATCATCATCGATCCG
ATGTTCATCATAAAGATTCGAAATTCAGCCAGCATCATAACCTTAGTCGAAGCCAGTTTCCACAAGATTTCCTCTTTGGTGCAACTTCCTCTTCTTATCA
ATACGAAGGTGCGACATGGGAAGATGAGCGGATAATGAACGGAAGCAACGGAGACGTGGCTACCAACTCGTACCGCTTATACAAGGATGAGATATCACTT
GTGAAACAGCTTGGAATGAATGCTTACAGATTTTCGATCTCCTGGTCCAGAGTGTTTCCTAATGGAACCTTAAGTGGAGGTATCAACAAAAGAGGAATCC
AATACTATAATAAGGTCATCAATGAGACCCTATCACAAGGATTGACACCGTTCATGACGCTTTTCCACATGGACTACCCTCGAGCATTACAAGATGAATA
TGGTGGCTTCTTAGGTCGCAGAATCGTGAATGATTTTCGGAACTTTGCGGATTTGTGCTTCAAAGAATTTGGAGACAGAGTGAAATATTGGGTGTCGATA
AACGAGCCGCATACTTTGAGCAGGGGAGGGTTCACTGTTGGTGATCTTGCACCCGGCCGTTGCAGTAACACTCATGCCGCTATTGTTCAACTGTACAGAC
AAAAATACCAGGCGACTCAAAAGGGTATAATCGGAATGTCGATGAACGTAGATTGGTTCATGCCTTATTCATCGAGCGAGGAAGACGAAAGAGCAGCAAA
CAGATGCCTTGACTTTATGTTTGGGTGGTTCATCGATCCGATAACCAGAGGTGATTATCCAGAGAGCATGAAGCAGTACGTCGGGAAACGACTGCCAAGA
TTTACTAAGAAAGAATCCGAACTGTTGAAAGGGTCGTTTGATTTCATTGGGGTCAACTATTACACCGCCCGATATGTAATCGACCAACCTGACATTGCTG
ACCCGAATCATCACAGCTATTTGACCGATCCCCATGCCATCTTGACTAGAGTCCCTGAAATTGGGAAGTACACACACTCACCACTTAAAGCTACACCAGA
TGATACCATGAGAGTTTCCTTCTACAGAGATCATCTTTCTTCCGTCAGAAACGCCATGCAGAAGGGAGCTAACGTGAAGGGCTACTTGGTTTGGACGTTA
CTGGACTGCTTCGAGTGGCTTTCGGATTACCATTTGAGATTCGGGTTGCATTATGTCGACAGTAGAAACCCTGTCTGTCAGGATTCCGAAACTCTCAGCA
ATTTGGTTCAGAAATTTTCTTGCAGGAAATCAGAAGAATAA
AA sequence
>Lus10020823 pacid=23177917 polypeptide=Lus10020823 locus=Lus10020823.g ID=Lus10020823.BGIv1.0 annot-version=v1.0
MVKAASTHLVVAILLIVIELAFGALSSSNHHRSDVHHKDSKFSQHHNLSRSQFPQDFLFGATSSSYQYEGATWEDERIMNGSNGDVATNSYRLYKDEISL
VKQLGMNAYRFSISWSRVFPNGTLSGGINKRGIQYYNKVINETLSQGLTPFMTLFHMDYPRALQDEYGGFLGRRIVNDFRNFADLCFKEFGDRVKYWVSI
NEPHTLSRGGFTVGDLAPGRCSNTHAAIVQLYRQKYQATQKGIIGMSMNVDWFMPYSSSEEDERAANRCLDFMFGWFIDPITRGDYPESMKQYVGKRLPR
FTKKESELLKGSFDFIGVNYYTARYVIDQPDIADPNHHSYLTDPHAILTRVPEIGKYTHSPLKATPDDTMRVSFYRDHLSSVRNAMQKGANVKGYLVWTL
LDCFEWLSDYHLRFGLHYVDSRNPVCQDSETLSNLVQKFSCRKSEE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42260 BGLU12 beta glucosidase 12 (.1) Lus10020823
[exp]
0 1

Lus10020823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.