Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TAIR10 short description
AT1G03050	603 / 0	ENTH/ANTH/VHS superfamily protein (.1)
AT4G02650	359 / 5e-116	ENTH/ANTH/VHS superfamily protein (.1)
AT1G05020	258 / 4e-77	ENTH/ANTH/VHS superfamily protein (.1)
AT4G32285	257 / 6e-77	ENTH/ANTH/VHS superfamily protein (.1.2)
AT2G25430	255 / 4e-76	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
AT2G01600	159 / 1e-41	ENTH/ANTH/VHS superfamily protein (.1)
AT4G25940	149 / 3e-38	ENTH/ANTH/VHS superfamily protein (.1)
AT1G14910	149 / 6e-38	ENTH/ANTH/VHS superfamily protein (.1)
AT5G57200	147 / 2e-37	ENTH/ANTH/VHS superfamily protein (.1)
AT5G35200	139 / 6e-35	ENTH/ANTH/VHS superfamily protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10012686 [exp]	1041 / 0	AT1G03050	642 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10001502 [exp]	280 / 3e-85	AT2G25430	914 / 0.0	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Lus10002920 [exp]	278 / 1e-84	AT2G25430	909 / 0.0	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Lus10019402 [exp]	235 / 9e-69	AT2G25430	580 / 0.0	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Lus10043260 [exp]	226 / 7e-66	AT4G32285	506 / 2e-173	ENTH/ANTH/VHS superfamily protein (.1.2)
Lus10035340 [exp]	183 / 2e-49	AT1G05020	489 / 1e-164	ENTH/ANTH/VHS superfamily protein (.1)
Lus10000201 [exp]	142 / 1e-39	AT1G03050	108 / 2e-28	ENTH/ANTH/VHS superfamily protein (.1)
Lus10013469 [exp]	153 / 2e-39	AT2G01600	758 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10034610 [exp]	151 / 6e-39	AT2G01600	765 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.006G118100 [exp]	681 / 0	AT1G03050	605 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.006G066900 [exp]	406 / 5e-134	AT4G32285	665 / 0.0	ENTH/ANTH/VHS superfamily protein (.1.2)
Potri.018G026900 [exp]	315 / 2e-98	AT2G25430	857 / 0.0	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Potri.006G255000 [exp]	298 / 4e-92	AT2G25430	866 / 0.0	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Potri.014G158600 [exp]	255 / 2e-76	AT1G05020	493 / 2e-167	ENTH/ANTH/VHS superfamily protein (.1)
Potri.018G128200 [exp]	250 / 1e-74	AT4G32285	626 / 0.0	ENTH/ANTH/VHS superfamily protein (.1.2)
Potri.010G110000 [exp]	230 / 2e-67	AT2G01600	732 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.008G132100 [exp]	224 / 3e-65	AT2G01600	749 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.018G142800 [exp]	198 / 2e-55	AT5G57200	655 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.002G224500 [exp]	177 / 7e-48	AT1G05020	500 / 2e-170	ENTH/ANTH/VHS superfamily protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0009 [flax] [poplar]	ENTH_VHS	PF07651 [flax] [poplar]	ANTH	ANTH domain

Representative CDS sequence

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>Lus10020824 pacid=23177956 polypeptide=Lus10020824 locus=Lus10020824.g ID=Lus10020824.BGIv1.0 annot-version=v1.0

ATGGCTCCGAGCAAGATTCGACGCGCCGTTGACGCGGTCAAAGACCACGCCAGCATAAGCCTGGCCAAGGTCAACAACAACAGCAGCTCCCTCTCGGACC

TGGAGGTGGCGATCGTGAAAGCCACGCGCCACGAGGTGTACCCGGCCGAGGAGCGCCACATTCGGGAGATTCTCAGCCTGACGTCCTACTCACGCGCCTA

CATTGGTGCTTGCGTCAGTACGCTCTCGAGGCGGCTCAATAAGACCCGTAACTGGACGGTGGCGCTCAAGACGCTGATGGTGATCCACCGGCTGCTCAGC

GAGGGCGACCCGGCTTACGAGCAGGAGATCTTCTTTGCGACTAGGAGGGGCACCCGGATTTTGAACCTCTCGGACTTTGTTGATTCCAGGTCCGAGTCAT

CCTGGGATTACTCGGCTTTCGTGAGGATGTACGCGTTGTACTTGGACGAGAAGCTGGAGTTCAAGATGCTCGGGAGGAGAGGGAAGCGTAGTACACTCGG

GTTTGAAGATGACGAAGATCAGGAGGAGGATGGTGCCGGTGGTGGCAGTTGTGGTAGTCATGGAAGTAGCCGGAGCAGAGGTGGCCGCAGAAAGGGTGGT

AGTGTTGGTGGTGGCAGCAGTGGTGGCGGTGGTGGTGGAAGAGCTGCGACGCCGCTTCGTGAGATGAAGTCGGAGAAACTCATCGGAAACGTTACACATT

TGCAGAATTTGCTTGACCGGTTCCTAGCTTGTCGCCCTACAGGTAATGCAAGATACGACAGGGTAGTCCTGGTAGCAATGTACCCAATAATGAAAGAGAG

CTTCACTCTGTACTACGACACCACAGAGATCCTTGCGGTCCTAATTGACCGCTTCATGGACATGGACCTCCCCGAAGGGGTCAAGATCTATGAGATTTTC

TGCCGCGTTTCCAAGCAGTTCGACGAGCTCGAAGCCTTCTATGGCTGGTCCAAGACAGCCGCCATTGCTCGTAGCTCTGAGTACCCTGATGTCGAGCGCA

TCTCACATAAGAAACTAGAGCTCATGGACGACTTCCTCCGCGACAAATCCATGCTCTCCCAAACCAACCGAAGCACCGCAGACTATGAATCCGCCGAAGA

AGAAGAGGAGTTCAAGGATGCTGATCAAGTGAGTACCGAGGAAGACAGCATCAAGGCATTGCCTCCTCCGGAGGAAGTCGAGCCACAAATAGTCGACGAA

GTTATAAAGGACGACGAGATAAACCACCAGCAGAACCAGACGGAGGCGGATTTGTTGAACTTAGGGGAGTATGCGATGTCAAGCGAAGATCATTCGAACG

AGTTGGCGTTAGCGTTGTTTAACGGAGTACCAATAGCATCATCAACATCGACAACTCCCGCGCTAGCGTGGGAAGCATTTAACGATAACGACTGGGAAAC

GGCGTTGGTGGAATCGGTGAGCAGCATGGCAGTGCAGAAGTCTGCACTGCCAGGCGGGTTCGATATGTCGTTGCTTGACGGGATGTATCAGCAAGGAGCG

AATACAGCATCGATGTCCGGTGTAGCTGGTTATGGGACAGTGAGCGGGAGTGAGAGCAGTGTTGCTCTTGGTTCGGCTGGAAGGCCGGCAATGCTGGCAC

TACCTGCCCCTCCGACAATGTCCACTACATCGTCGGGACGAAGTGGGTTTTCGGACCCGTTTGCAGCTTCGATTGCGGTCCCACCACCATCGTATGTGCA

GATGTCAGAGATGGAGAAGAAGCAGCAGCTGTTGAGGGAGGAGCAGATAATGTGGCAACAGTATGGAGCTAATGGTATGCAGGGGCATGTTGGGTATGGA

ATGGTACAACAACAGAATAGTTACAACATGGGTGGATACAGTACTCATGGATACTGA

AA sequence

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>Lus10020824 pacid=23177956 polypeptide=Lus10020824 locus=Lus10020824.g ID=Lus10020824.BGIv1.0 annot-version=v1.0

MAPSKIRRAVDAVKDHASISLAKVNNNSSSLSDLEVAIVKATRHEVYPAEERHIREILSLTSYSRAYIGACVSTLSRRLNKTRNWTVALKTLMVIHRLLS

EGDPAYEQEIFFATRRGTRILNLSDFVDSRSESSWDYSAFVRMYALYLDEKLEFKMLGRRGKRSTLGFEDDEDQEEDGAGGGSCGSHGSSRSRGGRRKGG

SVGGGSSGGGGGGRAATPLREMKSEKLIGNVTHLQNLLDRFLACRPTGNARYDRVVLVAMYPIMKESFTLYYDTTEILAVLIDRFMDMDLPEGVKIYEIF

CRVSKQFDELEAFYGWSKTAAIARSSEYPDVERISHKKLELMDDFLRDKSMLSQTNRSTADYESAEEEEEFKDADQVSTEEDSIKALPPPEEVEPQIVDE

VIKDDEINHQQNQTEADLLNLGEYAMSSEDHSNELALALFNGVPIASSTSTTPALAWEAFNDNDWETALVESVSSMAVQKSALPGGFDMSLLDGMYQQGA

NTASMSGVAGYGTVSGSESSVALGSAGRPAMLALPAPPTMSTTSSGRSGFSDPFAASIAVPPPSYVQMSEMEKKQQLLREEQIMWQQYGANGMQGHVGYG

MVQQQNSYNMGGYSTHGY

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10020824 [exp]	0	1

Lus10020824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10020824 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10020824 coexpression network