Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06470 216 / 6e-68 GNS1/SUR4 membrane protein family (.1) AT3G06460 184 / 4e-55 GNS1/SUR4 membrane protein family (.1) AT4G36830 64 / 2e-11 HOS3-1 GNS1/SUR4 membrane protein family (.1) AT1G75000 59 / 1e-09 GNS1/SUR4 membrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012685 [exp] 578 / 0 AT3G06470 259 / 3e-84 GNS1/SUR4 membrane protein family (.1) Lus10030547 [exp] 192 / 9e-59 AT3G06470 330 / 1e-114 GNS1/SUR4 membrane protein family (.1) Lus10012894 [exp] 184 / 6e-56 AT3G06470 298 / 5e-102 GNS1/SUR4 membrane protein family (.1) Lus10020972 [exp] 129 / 5e-37 AT3G06470 100 / 2e-27 GNS1/SUR4 membrane protein family (.1) Lus10016797 [exp] 71 / 7e-14 AT4G36830 296 / 2e-101 GNS1/SUR4 membrane protein family (.1) Lus10022493 [exp] 71 / 2e-13 AT4G36830 374 / 7e-131 GNS1/SUR4 membrane protein family (.1) Lus10018795 [exp] 44 / 2e-05 AT4G36830 157 / 1e-48 GNS1/SUR4 membrane protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G019800 [exp] 289 / 2e-96 AT3G06470 280 / 2e-94 GNS1/SUR4 membrane protein family (.1) Potri.003G019700 [exp] 240 / 3e-77 AT3G06470 315 / 2e-108 GNS1/SUR4 membrane protein family (.1) Potri.007G031500 [exp] 74 / 1e-14 AT4G36830 368 / 6e-129 GNS1/SUR4 membrane protein family (.1) Potri.014G040500 [exp] 64 / 4e-11 AT4G36830 323 / 5e-111 GNS1/SUR4 membrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01151 [flax] [poplar] ELO GNS1/SUR4 family
Representative CDS sequence Show only first row Show all	>Lus10020825 pacid=23177892 polypeptide=Lus10020825 locus=Lus10020825.g ID=Lus10020825.BGIv1.0 annot-version=v1.0 ATGGATCTCATCCTCTCAATAGGGAAACACACAGTCGAGTTCATCTTCAACACAGGGAAACACTCAGTCGACTACCTCCTTGCCAAAAGCCCCACCTTCA CTGCCCTACACTACTACTTAGTCAAACACCCCATTATCCAAACCTTCCAATGGCACCAAGGCCAAACCCTTGGCTCCTCCTTCACTTTCCTAACCCTCAC CGTCTTCCTCTACCTAACCCTAACCTTCATCCTCTCCCGCCGCCAACGCTTACACCTCCCACCGCCCAGTACCACCATGGTCAGAGACGACTCTGGCCGA AATGGCCACAATTCAGAAAATAACCTCAATGGTCATGGCGAGACTCGATCTGGCACACTCGTGGTTGGAGATACTGGACGAGATTTCAACAAGTCAGAAA AAGCCCTGAACAGTTACGAGTTCAAAAAACACACTGAGCACAAACTTCAATCTCGACCCCTAATTCCGCCATTGTCACCGCGAATCCTCCGCTTCCTGAC CGTGCTCCACAACGCAATCCTCCTCACAGTCTCCTTCGTCATGGCCCTGGGATGCCTTCTCTCAATCTTCACCCACCTCCCAGATGTCGACCATCTGGCC TGCTTCGCAAAGGGGACCCCACCACGGGGTCCCCTCTTCTTCTGGGGCTACGTCTTCTACCTATCGAAGATCTACGAGTACATCGACACGCTACTCATCA TCCTCAGCAGCTCGATGTCGCGGAGGCTTTCCTTCCTCCACGTGTACCACCACGCCACCGTGGTGGTCATGTGCTACATCTCGATGCACACATCGCAGTC GATGTACCCGGGAGTCCTCGTCACCAACTCGGCCGTCCACGTCGTCATGTACTTCTACTACCTGCTCTGCTCCCTAGGGATGAAGCCCAAGTGGAAGAAG ATCGTTACGGATTGTCAGATCGTGCAGTTCTACATCAGCTTTGGGATCATGGGTTGGATCTTCTACGTCCATTTCACCGGGTCGGGTTGCTCCGGGATCT GGGGTTGGTGCTTTGATGCTGTGTTCATTGCTTCTCTTTTATACTTGTTCTTGGATTTCCATACCAAGACGTACAGTGATGGTGAAAGCAAGAAGAAGAA GAAGAAGGGGATCGGTCAAGTCAACGGATCAGTTGAAGTGTTTGACTTCATCAAGCCTACGAAGCGAGCTTAA
AA sequence Show only first row Show all	>Lus10020825 pacid=23177892 polypeptide=Lus10020825 locus=Lus10020825.g ID=Lus10020825.BGIv1.0 annot-version=v1.0 MDLILSIGKHTVEFIFNTGKHSVDYLLAKSPTFTALHYYLVKHPIIQTFQWHQGQTLGSSFTFLTLTVFLYLTLTFILSRRQRLHLPPPSTTMVRDDSGR NGHNSENNLNGHGETRSGTLVVGDTGRDFNKSEKALNSYEFKKHTEHKLQSRPLIPPLSPRILRFLTVLHNAILLTVSFVMALGCLLSIFTHLPDVDHLA CFAKGTPPRGPLFFWGYVFYLSKIYEYIDTLLIILSSSMSRRLSFLHVYHHATVVVMCYISMHTSQSMYPGVLVTNSAVHVVMYFYYLLCSLGMKPKWKK IVTDCQIVQFYISFGIMGWIFYVHFTGSGCSGIWGWCFDAVFIASLLYLFLDFHTKTYSDGESKKKKKKGIGQVNGSVEVFDFIKPTKRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06460			GNS1/SUR4 membrane protein fam...		Lus10020825 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017468 [exp]	1.0	0.9987
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10028814 [exp]	2.0	0.9875
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10012685 [exp]	2.4	0.9595
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10004770 [exp]	3.2	0.9304
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10011350 [exp]	7.9	0.8697
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039362 [exp]	8.0	0.9331
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003106 [exp]	8.5	0.9075
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026927 [exp]	10.2	0.8441
AT3G10320			Glycosyltransferase family 61 ...		Lus10042043 [exp]	14.1	0.8349
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10024105 [exp]	15.7	0.8904

Compare expression of checked genes

Lus10020825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.