Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41480 370 / 4e-128 Peroxidase superfamily protein (.1) AT5G64120 369 / 5e-128 Peroxidase superfamily protein (.1) AT5G39580 360 / 7e-125 Peroxidase superfamily protein (.1.2) AT5G64110 342 / 3e-117 Peroxidase superfamily protein (.1) AT5G64100 314 / 3e-106 Peroxidase superfamily protein (.1) AT4G25980 278 / 6e-92 Peroxidase superfamily protein (.1) AT5G17820 272 / 3e-90 Peroxidase superfamily protein (.1) AT4G11290 270 / 3e-89 Peroxidase superfamily protein (.1) AT1G05260 261 / 8e-86 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT3G01190 261 / 9e-86 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012684 [exp] 589 / 0 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10007051 [exp] 401 / 8e-141 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10007052 [exp] 397 / 3e-139 AT2G41480 400 / 1e-140 Peroxidase superfamily protein (.1) Lus10015555 [exp] 340 / 1e-116 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10026748 [exp] 277 / 9e-92 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10025535 [exp] 278 / 1e-90 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10027984 [exp] 272 / 1e-89 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10008173 [exp] 270 / 2e-88 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10031548 [exp] 265 / 3e-87 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G125000 [exp] 437 / 6e-155 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 370 / 2e-128 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 356 / 7e-123 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 270 / 3e-89 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 268 / 1e-88 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 266 / 1e-87 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 266 / 1e-87 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 266 / 1e-87 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 266 / 1e-87 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 264 / 7e-87 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10020826 pacid=23177939 polypeptide=Lus10020826 locus=Lus10020826.g ID=Lus10020826.BGIv1.0 annot-version=v1.0 ATGACCACCTCACAATTCATAGTCACCCTTGTCCTAGCAATGTCTGCCCTATCCGTTATGGTCCATGGACAGGGAACCCGGGTCGGGTTCTACTCAACCA GCTGCCCTCGGGTCGAGACCATAGTCCGAACCGCGGTCCAATCCCACTTCGCCTCCGACCCTACGGTGGCTGCAGGCTTGCTCAGGATGCATTTCCACGA CTGTTTCGTGCAGGGCTGCGACGCTTCCGTCCTTATCTCTGGAACCGGTACCGAGAGAACCGCCGTCCCTAATCAGTCCCTCAACGGCTTCTCAGCCATT GATGATGCCAAGACTCAGCTCGAAACTGCTTGTCCTGGCGTCGTCTCCTGCGCTGATATCCTCGCTCTAGCTGCTCGCGACTCCGTCGTTTTGACAAGCG GACTAAGCTGGCCAGTTCCCACGGGACGAAGAGACGGCAGAGTTTCAGTCCAACAGGAAGCTGACGACAATTTGCCAGGACCAGCGGATACCGTCGATTC GCAGATCCGGCAGTTTAGCACTCTCGGCCTCAACGTTCAGGATCTCGTTACTCTCTCAGCTGGACACACTCTGGGGACAGCATCCTGCGCTACATTCAGC TACAGGCTCTACAACTACAACAACACGGGCGGACCCGACCCGTCGATCGCTCCCGCATTCCTCACCACGCTCCGGTCATTCTGCCCGCAGAACGGCGACG GATCGAGGCGGGTGGCGATGGACACCGGCAGCCAGAACCGGTTTGACAACTCGTATTTTACCAACATCAGGAACGGCCGTGGAGTTCTGGAGTCCGACCA GCGGGTGGTGGTGGACCCCCCGGCGGGACGCGTGGTGGGGGGGGGGGGGGTAGTGTCTGGGTGGCGGTATTTGGGCCTCAGTGGGCTTCTTGGGCTTACT TTCAATGTTGAGTTTGGGAGGTCCATGGTGAAGATGAGTAATATTGGTGTCAAGACCGGGACAAATGGGGAAATTCGCCGTGTTTGCTCTGCGATTAATT AG
AA sequence Show only first row Show all	>Lus10020826 pacid=23177939 polypeptide=Lus10020826 locus=Lus10020826.g ID=Lus10020826.BGIv1.0 annot-version=v1.0 MTTSQFIVTLVLAMSALSVMVHGQGTRVGFYSTSCPRVETIVRTAVQSHFASDPTVAAGLLRMHFHDCFVQGCDASVLISGTGTERTAVPNQSLNGFSAI DDAKTQLETACPGVVSCADILALAARDSVVLTSGLSWPVPTGRRDGRVSVQQEADDNLPGPADTVDSQIRQFSTLGLNVQDLVTLSAGHTLGTASCATFS YRLYNYNNTGGPDPSIAPAFLTTLRSFCPQNGDGSRRVAMDTGSQNRFDNSYFTNIRNGRGVLESDQRVVVDPPAGRVVGGGGVVSGWRYLGLSGLLGLT FNVEFGRSMVKMSNIGVKTGTNGEIRRVCSAIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41480			Peroxidase superfamily protein...		Lus10020826 [exp]	0	1
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013332 [exp]	1.7	0.9643
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012479 [exp]	3.3	0.9322
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	3.7	0.9615
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Lus10000523 [exp]	4.0	0.9264
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10019462 [exp]	4.9	0.9583
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034036 [exp]	6.5	0.9181
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	7.4	0.9515
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	8.5	0.9584
AT4G16260			Glycosyl hydrolase superfamily...		Lus10037749 [exp]	8.5	0.9374
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10019684 [exp]	9.3	0.8644

Compare expression of checked genes

Lus10020826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.