Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10500 201 / 2e-66 ATCPISCA chloroplast-localized ISCA-like protein (.1) AT2G16710 76 / 8e-18 Iron-sulphur cluster biosynthesis family protein (.1.2.3) AT2G36260 71 / 3e-16 Iron-sulphur cluster biosynthesis family protein (.1) AT5G03905 66 / 5e-14 Iron-sulphur cluster biosynthesis family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012683 [exp] 226 / 2e-76 AT1G10500 218 / 2e-73 chloroplast-localized ISCA-like protein (.1) Lus10017048 [exp] 65 / 3e-13 AT2G16710 220 / 5e-75 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Lus10014201 [exp] 64 / 6e-13 AT5G03905 204 / 2e-68 Iron-sulphur cluster biosynthesis family protein (.1) Lus10022714 [exp] 63 / 1e-12 AT5G03905 201 / 3e-67 Iron-sulphur cluster biosynthesis family protein (.1) Lus10021368 [exp] 54 / 7e-09 AT2G16710 211 / 3e-69 Iron-sulphur cluster biosynthesis family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085400 [exp] 200 / 5e-66 AT1G10500 227 / 9e-77 chloroplast-localized ISCA-like protein (.1) Potri.007G079600 [exp] 196 / 2e-64 AT1G10500 210 / 5e-70 chloroplast-localized ISCA-like protein (.1) Potri.008G020400 [exp] 75 / 2e-17 AT2G16710 197 / 5e-66 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Potri.010G238800 [exp] 74 / 3e-17 AT2G16710 211 / 2e-71 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Potri.006G084300 [exp] 68 / 1e-14 AT5G03905 199 / 2e-66 Iron-sulphur cluster biosynthesis family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01521 [flax] [poplar] Fe-S_biosyn Iron-sulphur cluster biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10020827 pacid=23177916 polypeptide=Lus10020827 locus=Lus10020827.g ID=Lus10020827.BGIv1.0 annot-version=v1.0 ATGGCGATGGCGTTCTCTCCCTCCACAATAACTTCCCACAAGTCTTCTTCTCCTTCTCTTCTCCGCCTTCCCAATCGCTCTTCACCTCCGAATTCAGTTT CCTTCAGATTCTCCTCCACGCCCAACATATGCCACAGATCGTCTCTCTCCGTTAGGTCATCGTCTTCAGCCTCAGTTGCTCCGCCGTCTCCCGGGGGAGT GGCGCCGGCAGTATCGTTGACTGAGACTGCGTTGAAGCACTTGAATCGGATGAGGAGTGACCGTGGTCAGGATTTGTGCTTGAGAATTGGGGTGAAGCAG GGCGGGTGCTCCGGTATGTCTTACACCATGGACTTCGAGAGTAGGGATAACGCTAGAGCTGACGATTCTATTATTGAATACGACGGCTTCGTCATCGTTT GTGATCCAAAGAGCCTCCTTTTCATGTTTGGGATGCAACTGGATTACAGCGATGCGCTCATCGGAGGTGGCTTCTCTTTCAAGAACCCGAACGCGACACA GACGTGTGGTTGTGGTAAATCTTTTGCAGCAGACATGTGA
AA sequence Show only first row Show all	>Lus10020827 pacid=23177916 polypeptide=Lus10020827 locus=Lus10020827.g ID=Lus10020827.BGIv1.0 annot-version=v1.0 MAMAFSPSTITSHKSSSPSLLRLPNRSSPPNSVSFRFSSTPNICHRSSLSVRSSSSASVAPPSPGGVAPAVSLTETALKHLNRMRSDRGQDLCLRIGVKQ GGCSGMSYTMDFESRDNARADDSIIEYDGFVIVCDPKSLLFMFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAADM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10020827 [exp]	0	1
AT5G65205			NAD(P)-binding Rossmann-fold s...		Lus10040878 [exp]	1.4	0.8871
AT4G02920			unknown protein		Lus10027996 [exp]	4.0	0.8464
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10005746 [exp]	4.7	0.8931
AT1G14780			MAC/Perforin domain-containing...		Lus10037426 [exp]	6.7	0.8715
AT4G12070			unknown protein		Lus10031257 [exp]	6.9	0.8766
AT5G13810			Glutaredoxin family protein (....		Lus10024164 [exp]	7.2	0.8745
AT1G62420			Protein of unknown function (D...		Lus10035594 [exp]	7.6	0.8294
AT2G37110			PLAC8 family protein (.1)		Lus10023176 [exp]	8.1	0.8655
AT5G64230			unknown protein		Lus10033177 [exp]	8.7	0.8484
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	10.2	0.8646

Compare expression of checked genes

Lus10020827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.