Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15290 410 / 2e-145 3-hydroxyacyl-CoA dehydrogenase family protein (.1) AT3G06860 102 / 4e-24 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012681 [exp] 517 / 0 AT3G15290 462 / 5e-166 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Lus10011102 [exp] 106 / 2e-25 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10043224 [exp] 103 / 2e-24 AT4G29010 1063 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10037495 [exp] 102 / 5e-24 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10006502 [exp] 100 / 1e-23 AT3G06860 670 / 0.0 multifunctional protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G398600 [exp] 428 / 2e-152 AT3G15290 446 / 9e-160 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Potri.018G082900 [exp] 131 / 4e-34 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Potri.010G011900 [exp] 102 / 4e-24 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.008G220400 [exp] 100 / 1e-23 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [flax] [poplar] 6PGD_C PF00725 [flax] [poplar] 3HCDH 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF02737 [flax] [poplar] 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10020828 pacid=23177991 polypeptide=Lus10020828 locus=Lus10020828.g ID=Lus10020828.BGIv1.0 annot-version=v1.0 ATGGCGGAGATAAAATCGGTCGGGGTAGTAGGTAGCGGCCAAATGGGCTCCGGCATCGCTCAACTCGCCGCCGTTCATGGCCTCAGTGTCTGCCTTCTTG ATACGGATTCCGATGCTCTATCCAGAGCCAGAGCCTCCATCGCCGCCAATGTTCGCCGGATGGTCTCCAAAGGCCACCTCTCTCAGGCCAGAGGAGACAA TGCTCTGAGGCTTCTAAGCTATACCTTGAATCTTGAAGATTTTCGCGATGCAGATATCGTGATCGAGGCCATTCTCGAGTCCGAGGAGGTGAAGAAAATC TTGTTCGTGCAACTCGACAAGATTGTTAAACCTTCTAGCATCTTAGCTTCCAATACAAGTTCCATTTCGATCACTCGTCTCGCGTCTGCCATTAGCAGAC CTCGTCAGGTAATTGGGATGCATTTCATGAACCCTCCTCCCATAATGAAGTTAGTCGAGATCATACGGGGAGCAGACACATCAGACGAGACATTCCTCGC AACCAAAGCCTTGGCAGAAAGGTTTGGGAAGACAGTAATTTGCTCGCAGGACTTCGCAGGATTCATCGTGAACAGGATCTTGATGCTGATGATAAACGAA GCCTTCTATACTCTGTACACAGGAGTGGCGACAAAGGAGGACATCGATACAGGGATGAAGTTAGGGACAAACCATCCAATGGGTCCACTTGAACTTGCCG ATTTCATCGGACTTGATGTATGCTTGTCGATCATGAAGGTCCTTCATGCCGGGTTAGGGGACGCTAAGTACGCTCCCTGCCCTCTTCTCGTACAGTATGT CGATGCAGGACGCCTTGGTCGAAAACGTGGCCTCGGGGTGTACGACTATCGGAAACCATCTGCACGACTTTGA
AA sequence Show only first row Show all	>Lus10020828 pacid=23177991 polypeptide=Lus10020828 locus=Lus10020828.g ID=Lus10020828.BGIv1.0 annot-version=v1.0 MAEIKSVGVVGSGQMGSGIAQLAAVHGLSVCLLDTDSDALSRARASIAANVRRMVSKGHLSQARGDNALRLLSYTLNLEDFRDADIVIEAILESEEVKKI LFVQLDKIVKPSSILASNTSSISITRLASAISRPRQVIGMHFMNPPPIMKLVEIIRGADTSDETFLATKALAERFGKTVICSQDFAGFIVNRILMLMINE AFYTLYTGVATKEDIDTGMKLGTNHPMGPLELADFIGLDVCLSIMKVLHAGLGDAKYAPCPLLVQYVDAGRLGRKRGLGVYDYRKPSARL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10020828 [exp]	0	1
AT4G28240			Wound-responsive family protei...		Lus10039758 [exp]	1.4	0.9704
AT3G15260			Protein phosphatase 2C family ...		Lus10005405 [exp]	2.0	0.9707
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10038966 [exp]	4.6	0.9553
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Lus10005221 [exp]	6.8	0.9464
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10027045 [exp]	6.9	0.9677
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10018383 [exp]	7.0	0.9652
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10022392 [exp]	7.3	0.9450
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	8.9	0.9646
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10043026 [exp]	11.6	0.9663
AT2G14680		MEE13	maternal effect embryo arrest ...		Lus10010456 [exp]	12.2	0.9403

Compare expression of checked genes

Lus10020828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.