Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01420 475 / 1e-164 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G70940 470 / 2e-162 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G23080 460 / 6e-160 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G73590 381 / 9e-128 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT5G57090 367 / 3e-122 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G77110 252 / 2e-78 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT5G15100 124 / 6e-32 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G16530 123 / 7e-32 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009685 [exp] 377 / 2e-129 AT1G73590 568 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009054 [exp] 380 / 2e-127 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 356 / 1e-117 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 353 / 2e-116 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10018006 [exp] 258 / 1e-85 AT1G73590 353 / 5e-120 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10012680 [exp] 181 / 9e-55 AT2G01420 245 / 8e-78 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10042004 [exp] 150 / 2e-41 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10020193 [exp] 136 / 1e-36 AT5G16530 548 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10026994 [exp] 135 / 2e-36 AT5G16530 532 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G112800 [exp] 523 / 0 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 518 / 0 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 423 / 2e-144 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 416 / 1e-141 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 381 / 7e-128 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 372 / 9e-125 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 371 / 2e-124 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.002G072200 [exp] 265 / 1e-83 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.005G187500 [exp] 262 / 1e-82 AT1G77110 707 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.001G205200 [exp] 259 / 8e-82 AT5G57090 523 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10020829 pacid=23177903 polypeptide=Lus10020829 locus=Lus10020829.g ID=Lus10020829.BGIv1.0 annot-version=v1.0 ATGGCTCCGTCCGGTGGTGGAAGATCTTCTCCCCTGACCAAAGCTCCGGCACAATGCTCTGGCATCAACCGATTCGTTGCCATCTTCGCCGTCCCTCTCC TCTCCTTCCACTTCATATCCACCAACGACCCTTACGCCATGAACCTCCGCTTCATCGCTGCCGACACCCTCCAGAAAATCATCATGCTCGTCGCCCTCGG ATTCTGGACAAACCTCACCAAAAACGGCAGCCTCGAGTGGATGATTACCATTTTCTCCCTCTCAACTCTCCCCAACACCCTCGTCATGGGAATCCCTCTC CTAATCGCCATGTACGGGCCTTACTCCGGCAGCCTCATGGTCCAGGTCGTCGTTCTTCAGTGCATCATTTGGTATACTCTGCTTTTATTCCTATTCGAAT ACAGGGGAGCCAAGATGCTGATCATGGAACAGTTCCCCGAAACGGCAGCGTCTATTGTGTCGTTTAAGGTCGACTCCGACGTCGTTTCGCTTGACGGCAG GGAGTTTCTCGAAACCGATGCCGAGATTGGCGATGACGGGAAGCTCCACATCACCGTGAGGAAATCCAACGCTTCCAGGAGATCCGCAATCGGGTTGGGA GCCGGACCCGGGTCGTTCTCCGGGTTGACTCCTCGCCCATCGAATTTGACCGGAGCGGAGATTTATAGCTTAAGCTCGTCGAGGAATCCGACTCCTCGTG GATCTAATTTCAACCATTCCGATTTTTACTCCATGATGGGGGTTCACGGCGGCGGCGGTGGTCCTCGGCATTCAAATTTCGCCGCGGCGGATTTGTATTC GGTTCAGTCTTCCCGGGGACCTACTCCACGGCCGTCGAATTTCGAGGAGAATACTGCTTCGTCTCCTAAATTCGGGTTTTACCCGGCGCCGAACCCTGAA TTCTCTTCCTCTGCCCCCACCACCACCACTGCCGTCGTCGCCGCGGCGGCGAAGAGCCTCGCCAAAAGCCAACAGCAGCAGGGCGGCGGGAAAGCGAATA ATAATAATAACCAACACGAAGCAAAGGAGCTGCATATGTTTGTGTGGAGCTCGAGTAACTCGCCGGCGTCGGAAGCTGCCGGCGGGGGGGGCGTGTTGGG GCGCCTGAGATGCATCCGAAAGCTGCAGTTGCAGGAGAAGGAGCAGGAGGAAGGAATAGACTAA
AA sequence Show only first row Show all	>Lus10020829 pacid=23177903 polypeptide=Lus10020829 locus=Lus10020829.g ID=Lus10020829.BGIv1.0 annot-version=v1.0 MAPSGGGRSSPLTKAPAQCSGINRFVAIFAVPLLSFHFISTNDPYAMNLRFIAADTLQKIIMLVALGFWTNLTKNGSLEWMITIFSLSTLPNTLVMGIPL LIAMYGPYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGREFLETDAEIGDDGKLHITVRKSNASRRSAIGLG AGPGSFSGLTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVHGGGGGPRHSNFAAADLYSVQSSRGPTPRPSNFEENTASSPKFGFYPAPNPE FSSSAPTTTTAVVAAAAKSLAKSQQQQGGGKANNNNNQHEAKELHMFVWSSSNSPASEAAGGGGVLGRLRCIRKLQLQEKEQEEGID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020829 [exp]	0	1
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020830 [exp]	1.0	0.9428
AT5G55960			unknown protein		Lus10016650 [exp]	2.8	0.8058
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	4.2	0.8368
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10033957 [exp]	4.2	0.8341
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10035518 [exp]	6.7	0.8041
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10029778 [exp]	9.5	0.8039
AT4G11050		ATGH9C3	glycosyl hydrolase 9C3 (.1)		Lus10033956 [exp]	10.0	0.8153
AT5G57970			DNA glycosylase superfamily pr...		Lus10038388 [exp]	11.7	0.8231
AT5G48460			Actin binding Calponin homolog...		Lus10038235 [exp]	13.2	0.8079
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10033630 [exp]	14.3	0.7806

Compare expression of checked genes

Lus10020829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.