Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01420 308 / 2e-103 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G70940 301 / 2e-100 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT5G57090 296 / 6e-98 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G23080 295 / 8e-98 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G73590 249 / 2e-80 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT1G77110 241 / 8e-78 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT5G15100 209 / 2e-67 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G16530 181 / 1e-56 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009686 [exp] 301 / 2e-106 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10042004 [exp] 301 / 1e-102 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10018007 [exp] 289 / 1e-101 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10009054 [exp] 303 / 5e-101 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 288 / 5e-95 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 288 / 6e-95 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10010303 [exp] 219 / 4e-71 AT5G15100 399 / 1e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10012680 [exp] 214 / 7e-71 AT2G01420 245 / 8e-78 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10013422 [exp] 215 / 1e-69 AT5G15100 397 / 4e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G129400 [exp] 323 / 1e-108 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 319 / 5e-107 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 313 / 5e-105 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 311 / 1e-104 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 304 / 7e-102 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 297 / 3e-99 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 294 / 1e-97 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.002G072200 [exp] 243 / 2e-78 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.005G187500 [exp] 241 / 5e-78 AT1G77110 707 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.014G146800 [exp] 236 / 1e-76 AT1G23080 239 / 4e-73 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10020830 pacid=23177904 polypeptide=Lus10020830 locus=Lus10020829.g ID=Lus10020830.BGIv1.0 annot-version=v1.0 ATGCCACCGGCGAGTGTGATGACGAGGTTGATTCTGATAATGGTGTGGAGGAAGCTCATCCGCAACCCAAACACTTACTCCAGCCTCATCGGACTCATTT GGTCTCTTGTAGCCTTCCGGTGGCATGTAGCAATGCCTAAAATAATAGAGAAGTCAATCTCCATACTGTCGGATGCTGGCCTCGGAATGGCTATGTTCAG CTTAGGATTGTTCATGGCTTTGCAACCCAAGATCATAGCCTGTGGGAATTCGGTTGCGGCATTTGCGATGGCGGTTCGGTTTCTAACCGGACCGGCGGTT ATGGCTGCTGCTTCCATTGCTGTCGGGCTTCGTGGTACCTTACTCCATATCGCCATTGTTCAGGCTGCACTACCACAGGGTATTGTTCCTTTCGTGTTCG CTAAAGAGTACAATGTTCACCCTCAAATTCTTAGTACTGGGGTTATCTTTGGAATGTTGATCGCCCTGCCAATCACTCTGGTCTACTACATTCTTCTTGG GTTGTGA
AA sequence Show only first row Show all	>Lus10020830 pacid=23177904 polypeptide=Lus10020830 locus=Lus10020829.g ID=Lus10020830.BGIv1.0 annot-version=v1.0 MPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVAFRWHVAMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVAAFAMAVRFLTGPAV MAAASIAVGLRGTLLHIAIVQAALPQGIVPFVFAKEYNVHPQILSTGVIFGMLIALPITLVYYILLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020830 [exp]	0	1
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020829 [exp]	1.0	0.9428
AT4G11050		ATGH9C3	glycosyl hydrolase 9C3 (.1)		Lus10033956 [exp]	3.5	0.8616
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10012680 [exp]	8.1	0.8288
AT5G40960			Protein of unknown function (D...		Lus10035200 [exp]	10.2	0.7720
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10033630 [exp]	13.0	0.7841
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031882 [exp]	13.5	0.7974
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10020236 [exp]	17.2	0.7380
AT5G55960			unknown protein		Lus10016650 [exp]	18.7	0.7719
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10018774 [exp]	18.9	0.8629
AT5G57970			DNA glycosylase superfamily pr...		Lus10038388 [exp]	19.2	0.8149

Compare expression of checked genes

Lus10020830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.