Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11925 100 / 7e-28 Stigma-specific Stig1 family protein (.1) AT1G50720 86 / 1e-21 Stigma-specific Stig1 family protein (.1) AT4G26880 70 / 1e-15 Stigma-specific Stig1 family protein (.1) AT5G55110 66 / 3e-14 Stigma-specific Stig1 family protein (.1) AT1G53130 66 / 7e-14 GRI GRIM REAPER, Stigma-specific Stig1 family protein (.1) AT1G50650 59 / 3e-11 Stigma-specific Stig1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012679 [exp] 300 / 3e-106 AT1G11925 104 / 3e-29 Stigma-specific Stig1 family protein (.1) Lus10043047 [exp] 71 / 1e-15 AT1G50720 133 / 3e-40 Stigma-specific Stig1 family protein (.1) Lus10011146 [exp] 64 / 3e-13 AT1G50720 125 / 2e-37 Stigma-specific Stig1 family protein (.1) Lus10011117 [exp] 64 / 3e-13 AT1G50720 117 / 6e-34 Stigma-specific Stig1 family protein (.1) Lus10006512 [exp] 62 / 9e-13 AT1G50650 71 / 5e-16 Stigma-specific Stig1 family protein (.1) Lus10041930 [exp] 62 / 2e-12 AT1G53130 152 / 1e-47 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Lus10000696 [exp] 62 / 5e-12 AT1G50650 100 / 3e-26 Stigma-specific Stig1 family protein (.1) Lus10005544 [exp] 52 / 3e-09 AT1G53130 125 / 6e-38 GRIM REAPER, Stigma-specific Stig1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228100 [exp] 121 / 1e-35 AT1G11925 94 / 2e-25 Stigma-specific Stig1 family protein (.1) Potri.004G007100 [exp] 120 / 2e-35 AT1G11925 98 / 1e-26 Stigma-specific Stig1 family protein (.1) Potri.004G007000 [exp] 117 / 2e-34 AT1G11925 96 / 5e-26 Stigma-specific Stig1 family protein (.1) Potri.004G006800 [exp] 115 / 2e-33 AT1G11925 80 / 1e-19 Stigma-specific Stig1 family protein (.1) Potri.004G007200 [exp] 116 / 5e-33 AT1G11925 98 / 5e-26 Stigma-specific Stig1 family protein (.1) Potri.004G006900 [exp] 112 / 2e-32 AT1G11925 108 / 4e-31 Stigma-specific Stig1 family protein (.1) Potri.004G030900 [exp] 112 / 4e-32 AT1G11925 101 / 4e-28 Stigma-specific Stig1 family protein (.1) Potri.011G008804 [exp] 105 / 2e-29 AT1G11925 98 / 8e-27 Stigma-specific Stig1 family protein (.1) Potri.011G008932 [exp] 103 / 9e-29 AT1G11925 91 / 4e-24 Stigma-specific Stig1 family protein (.1) Potri.011G009000 [exp] 103 / 1e-28 AT1G11925 98 / 1e-26 Stigma-specific Stig1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04885 [flax] [poplar] Stig1 Stigma-specific protein, Stig1
Representative CDS sequence Show only first row Show all	>Lus10020831 pacid=23178002 polypeptide=Lus10020831 locus=Lus10020831.g ID=Lus10020831.BGIv1.0 annot-version=v1.0 ATGAAGAATTTGATGATGCTCGTTACTCTTGTGACGTCGATGGCCATACTACTCCTGACCGCCAACGTCACACCAACAACATCCCAAGTAGAAGAAAACC AACCACTCTTCGTCGGCGACGGCACCGGTAGCCGCTTTCTTCTTGATCAGAAAACATCATCTTCTTTGGCGGCGGCAGGGGACAACTGGCGGCGGCGCAA GTGTGACAAGTTTCCGACGACATGCTACCTGAGAGGGAGCCCGGGCCCGCATTGCTGCAACAGGAAGTGCGTGGACGTCGCTAAGGATCGAACCAACTGC GGCAAGTGTGGGAGGAGGTGCGGGTACAGCGAGATATGCTGCGGTGGGAAGTGTGTCAACCCGTCGTTCAACCGGTCAAACTGCGGCGGGTGTGGGAACA AGTGTGATGCTCCTGCGGTCGGTGGTCGCAAAAAGCGGGCTTTCTGTGCGTTCGGCCTCTGCAACTATGCGTAG
AA sequence Show only first row Show all	>Lus10020831 pacid=23178002 polypeptide=Lus10020831 locus=Lus10020831.g ID=Lus10020831.BGIv1.0 annot-version=v1.0 MKNLMMLVTLVTSMAILLLTANVTPTTSQVEENQPLFVGDGTGSRFLLDQKTSSSLAAAGDNWRRRKCDKFPTTCYLRGSPGPHCCNRKCVDVAKDRTNC GKCGRRCGYSEICCGGKCVNPSFNRSNCGGCGNKCDAPAVGGRKKRAFCAFGLCNYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11925			Stigma-specific Stig1 family p...		Lus10020831 [exp]	0	1
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10032150 [exp]	2.8	0.9874
					Lus10043316 [exp]	2.8	0.9913
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Lus10035670 [exp]	3.7	0.9875
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	6.8	0.9901
AT5G09360		LAC14	laccase 14 (.1)		Lus10006157 [exp]	8.4	0.9868
AT1G03220			Eukaryotic aspartyl protease f...		Lus10010278 [exp]	8.8	0.9894
					Lus10032178 [exp]	10.2	0.9893
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10024120 [exp]	10.2	0.9880
AT1G17860			Kunitz family trypsin and prot...		Lus10039163 [exp]	10.4	0.9869
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10030931 [exp]	10.8	0.9854

Compare expression of checked genes

Lus10020831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.