Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23260 46 / 2e-06 CRK18 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.2) AT4G23130 41 / 0.0001 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT5G37660 40 / 0.0001 PDLP7 plasmodesmata-located protein 7 (.1.2) AT4G21230 40 / 0.0002 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G05200 40 / 0.0002 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT3G22060 39 / 0.0005 Receptor-like protein kinase-related family protein (.1) AT4G04570 39 / 0.0006 CRK40 cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 40 (.2) AT4G23320 39 / 0.0007 CRK24 cysteine-rich RLK (RECEPTOR-like protein kinase) 24 (.1) AT3G21940 39 / 0.0007 Receptor protein kinase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020834 [exp] 160 / 3e-51 AT1G70520 46 / 3e-06 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10033534 [exp] 89 / 5e-23 ND / Lus10012676 [exp] 59 / 8e-12 ND / Lus10012677 [exp] 56 / 2e-10 ND / Lus10008656 [exp] 42 / 2e-05 AT4G05200 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10020814 [exp] 42 / 4e-05 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2) Lus10018377 [exp] 42 / 7e-05 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10029122 [exp] 40 / 0.0003 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10014475 [exp] 40 / 0.0003 AT1G04520 391 / 1e-137 plasmodesmata-located protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257300 [exp] 42 / 6e-05 AT1G04520 243 / 2e-79 plasmodesmata-located protein 2 (.1) Potri.007G120600 [exp] 42 / 6e-05 AT3G22060 214 / 2e-69 Receptor-like protein kinase-related family protein (.1) Potri.011G028700 [exp] 41 / 0.0001 AT4G21410 460 / 4e-152 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.017G130800 [exp] 40 / 0.0003 AT5G37660 314 / 1e-107 plasmodesmata-located protein 7 (.1.2) Potri.004G086000 [exp] 39 / 0.0003 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2) Potri.007G120300 [exp] 39 / 0.0003 AT3G22060 194 / 1e-61 Receptor-like protein kinase-related family protein (.1) Potri.007G120601 [exp] 39 / 0.0004 AT3G22060 199 / 9e-65 Receptor-like protein kinase-related family protein (.1) Potri.011G030200 [exp] 39 / 0.0007 AT4G23220 558 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) Potri.007G056000 [exp] 39 / 0.0008 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.011G029900 [exp] 37 / 0.0008 AT4G05200 112 / 1e-29 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10020833 pacid=23178011 polypeptide=Lus10020833 locus=Lus10020833.g ID=Lus10020833.BGIv1.0 annot-version=v1.0 ATGAAGAACATGGCCCATATCATGACAACTTATTCATTGATCATCTTCCTCGTAGCATTCACATTCAGCAGCATCCTCGTCGTTGAAGGCGGAGGCCCCA ACATAACCTATGTTCATTCTTCTTGCGGACCGACGAACACAACCAAGGCCAGAATGAGAAAATCAGCACTAAAAGCCATTGATGCTGCTGTCTTTGCTTA TCCAGGCCCTGGGGAGAAGGCTAGCTGCAGCTCTATGAGGCCTCGCGAAATCGTTGCATCGGCCATGTGTTGGGGAGATATATCTGTTCAGGACTGCAAA AACTGTCTATGGAATGCGCAGTTCAGGCTGGTTGATTACTACTGCCGAAACCTATTCGGAGGTCAGCTCACACTTACAAACTGCTACTTGAGGTATGAGG TCTATCCTTTTTGTTCATGA
AA sequence Show only first row Show all	>Lus10020833 pacid=23178011 polypeptide=Lus10020833 locus=Lus10020833.g ID=Lus10020833.BGIv1.0 annot-version=v1.0 MKNMAHIMTTYSLIIFLVAFTFSSILVVEGGGPNITYVHSSCGPTNTTKARMRKSALKAIDAAVFAYPGPGEKASCSSMRPREIVASAMCWGDISVQDCK NCLWNAQFRLVDYYCRNLFGGQLTLTNCYLRYEVYPFCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23260		CRK18	cysteine-rich RLK (RECEPTOR-li...		Lus10020833 [exp]	0	1
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	6.9	1.0000
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006721 [exp]	7.2	1.0000
AT2G40070			unknown protein		Lus10008717 [exp]	9.2	1.0000
					Lus10010414 [exp]	11.5	1.0000
					Lus10010663 [exp]	12.5	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	12.8	1.0000
					Lus10014229 [exp]	14.4	1.0000
AT2G39518			Uncharacterised protein family...		Lus10031304 [exp]	15.3	1.0000
AT4G03230			S-locus lectin protein kinase ...		Lus10031602 [exp]	16.1	1.0000
					Lus10035743 [exp]	17.7	1.0000

Compare expression of checked genes

Lus10020833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.