Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23270 43 / 3e-05 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT1G70520 43 / 4e-05 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT4G21400 41 / 0.0001 CRK28 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (.1) AT1G70690 40 / 0.0002 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) AT4G23280 40 / 0.0004 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020833 [exp] 149 / 5e-47 AT4G23260 47 / 1e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.2) Lus10033534 [exp] 86 / 6e-22 ND / Lus10012676 [exp] 66 / 1e-14 ND / Lus10012677 [exp] 52 / 8e-09 ND / Lus10026810 [exp] 48 / 2e-07 AT1G63600 41 / 1e-04 Receptor-like protein kinase-related family protein (.1) Lus10030901 [exp] 48 / 6e-07 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030589 [exp] 48 / 7e-07 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10008656 [exp] 46 / 1e-06 AT4G05200 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10011894 [exp] 46 / 1e-06 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043800 [exp] 49 / 2e-07 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043700 [exp] 45 / 4e-06 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.011G030300 [exp] 44 / 2e-05 AT4G21410 533 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029300 [exp] 44 / 2e-05 AT4G21410 539 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030212 [exp] 43 / 2e-05 AT4G21410 537 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G028600 [exp] 42 / 6e-05 AT4G21410 554 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.005G208400 [exp] 41 / 6e-05 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.011G029900 [exp] 40 / 8e-05 AT4G05200 112 / 1e-29 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.011G028700 [exp] 40 / 0.0004 AT4G21410 460 / 4e-152 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G030400 [exp] 39 / 0.0004 AT4G38830 190 / 4e-56 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10020834 pacid=23177922 polypeptide=Lus10020834 locus=Lus10020834.g ID=Lus10020834.BGIv1.0 annot-version=v1.0 ATGAACAACAAAATCCAAACCGTCGTGACTACTTCTTCCTTGATCATCTTCTTCTTCCTCTTTTCATCCACAAACGACGTCCTCGTCGTGGTTTCGGCCG ATCCCAACACGACCTATGTCCAATCCGCCTGCAGCCCGGCGTCCACGGATGCCGACGTACTCAGAATCATAGCACTGGAAGTCATAGACAATGCTGTGGA TAAATATCAAGGACCTGGTGAAAAGGCCAGCTGCGCCTATGTCTCTGATCAAAAGCCTTACAATTTCTACGCATCAGCTGTGTGTTGGGGAGACATCTCA GTGCAGGATTGCAAGGATTGTCTGTGGAATGCCCAGTTCAGGCTCGTCGATCACTACTGCAGGTTCCGGTACGGCGGCCGGCTCATGCTGTCCGACTGTT TCTTGAGGTTTGAGGATTACGGTTTTTGTTCATCGGTATCATGA
AA sequence Show only first row Show all	>Lus10020834 pacid=23177922 polypeptide=Lus10020834 locus=Lus10020834.g ID=Lus10020834.BGIv1.0 annot-version=v1.0 MNNKIQTVVTTSSLIIFFFLFSSTNDVLVVVSADPNTTYVQSACSPASTDADVLRIIALEVIDNAVDKYQGPGEKASCAYVSDQKPYNFYASAVCWGDIS VQDCKDCLWNAQFRLVDHYCRFRYGGRLMLSDCFLRFEDYGFCSSVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10020834 [exp]	0	1
AT1G26380			FAD-binding Berberine family p...		Lus10023374 [exp]	3.0	0.7297
AT5G25940			early nodulin-related (.1)		Lus10033027 [exp]	10.2	0.7028
					Lus10005512 [exp]	11.2	0.6634
AT5G04550			Protein of unknown function (D...		Lus10002840 [exp]	16.9	0.6401
AT1G11410			S-locus lectin protein kinase ...		Lus10007608 [exp]	24.9	0.7077
					Lus10036838 [exp]	26.5	0.6407
					Lus10036841 [exp]	27.1	0.6407
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10012953 [exp]	30.9	0.7070
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10016392 [exp]	33.4	0.7148
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10013118 [exp]	34.2	0.7255

Compare expression of checked genes

Lus10020834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.