Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39400 1379 / 0 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 933 / 0 BRL1 BRI1 like (.1.2) AT3G13380 927 / 0 BRL3 BRI1-like 3 (.1) AT2G01950 845 / 0 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT5G07280 503 / 4e-158 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G74360 457 / 2e-141 Leucine-rich repeat protein kinase family protein (.1) AT5G53890 437 / 5e-135 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT5G65700 432 / 3e-133 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 431 / 6e-133 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 429 / 2e-132 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033533 [exp] 2074 / 0 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 1411 / 0 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 1400 / 0 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039132 [exp] 845 / 0 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10038726 [exp] 843 / 0 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10009213 [exp] 466 / 3e-145 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10005403 [exp] 460 / 3e-143 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10038875 [exp] 457 / 4e-140 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10037358 [exp] 441 / 1e-136 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G086500 [exp] 1493 / 0 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G078100 [exp] 1471 / 0 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G169600 [exp] 953 / 0 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 935 / 0 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.008G140500 [exp] 864 / 0 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 850 / 0 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.015G141200 [exp] 498 / 2e-155 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 494 / 1e-153 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G398500 [exp] 461 / 2e-143 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.003G074000 [exp] 459 / 2e-142 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020835 pacid=23177938 polypeptide=Lus10020835 locus=Lus10020835.g ID=Lus10020835.BGIv1.0 annot-version=v1.0 ATGCTGACCAAAGCCCTCCTACTCGTTTTCCCACTCCTCCTCCTCCTCCTCTCATCGGCGGCGAGTCAAGACAGCCGGAGTCTCCTCACCGCCTTCAAAT CCTCCTTACCCCACCCACCGCCGCCACTCCTCTCCAACTGGGTACCGAACCAAGACCCTTGTACCTTCAATGGAGTTAAATGTCATGACAACAACGCAGT CTCCTCCATTGACCTAAGCTTCGTCCCTTTGAGCACCGATTTCAAATCCGTGGCGTCTTTTCTTCTCTCCATCGACTCCCTGGAAACGCTATCTCTCCAA TCAGCTAATATATCCGGCTCCTTATCTTCCGGATCTTCTTCCAAGTGCAGCTCTGTTTTGACCGGATTAGATCTCTCCCTCAACTCCCTCTCTGGTCCTA TCTCTGATATTGCTGCTCTCTCTTCTTGCTCGGGTTTAAAAGCTTTGAATCTCTCCAGGAACGCTCTTGATTTCTCTGTTAAGGGAAAATGGAGCGGCCT CAAGCTTGGATTGTTGGAGTCGTTGGATCTTTCCTGGAACAAGATTTCAGGCTCCAACGCTATCTCCTTCGTCCTGCTCGGAGGCTGCAAAGACTTGAAG CTTCTGACGATGAGAGGGAACAAAGTCGCCGGCGACGTCGACGTTTCCGGTTGCTCGAGTCTCGAGTATTTCGATATATCGTCGAATAACTTCTCCGGCT CTGCTCTTCCGAACTTCGGCGGCTGCTCTTCTCTCCAACACCTCGACATCTCCCGGAACAGATTCTCCGGCGATCTCGTCCGGTCAATCGGTTCGTGTTC AAAGCTCAGTTCCCTCAACGCCTCCGCTAATCTCTTCTCCGGCGAAATCCCGGCGGGACTTCCGACGGGGAATTTGCAGTTTCTATCGTTATCCGGCAAC AATTTCCAAGGAAAAATCCCTCCGGAGATCACCGATGCTTGTCGAGGTCTCGTAATCCTCGACCTCTCTTACAACAATCTCTCCGGCGAGGTTCCGCCGG CGTTGACTTCCTGCACTTCCCTGCAGACTCTCGACATTTCCGTGAACAACTTCACCGGCGAAATCCCTATTCCCGTCCTGCTAAAAATGGTAAGTTTGAA GAGAATACTTCTTTCTTACAACAATTTCGTTGGTGAGCTGTCTGATTCTTTTTCGGCGATGATGAATTTGGAGTCGTTAGATGTGAGTTCCAACGATTTG AAAGGTCAAATCCCCACCGGAATCTGTCAAAACCCTAACGGAAACTTGAAAGAGATCTTCTTCCAGAACAATCAGTTCACCGGCTCTATACCTGCTAGTT TAAGCAACTGTACACAGTTAACTTCACTTCATTTGAGCTTCAATTACCTCACAGGAACAATTCCTCCAAGCTTGGGATCCTTAACCAAGCTCCAGGATTT GAAGCTCTGGTTCAACCAGCTTCACGGAGAGATCCCTCTGGAGATAATGTCGATTCCGAATTTGCAGACATTGATTCTCGACTTCAACGAGCTTACCGGC TCAATACCTTCAAGCATAAGCAACTCAACTAATCTGAACTGGATTTCATTATCCAACAACAAGCTGCACGGCGAAATCCCTTCTTCTATTGGCAAGCTCG ATAGCCTCGCAATCTTGAAGCTCAGTAACAACTCGCTCCAAGGTCCGATTCCAGATGAGCTTGGGGACTGCAAGAGCTTGATTTGGCTCGATTTGAACAC CAACGAGCTAACGGGTTCGATACCGTCCAATCTGTTCAAGCAGTCTGGGAAAATTGCTGTGAATTTCATCACGGGGAAGAGGTTTGTGTTCTTGAAGAAT GAGAAGAGTGATTACTGCCATGGAACCGGGAATCTGCTCGAGTTTGCCGGGATAAGGCCCGAAAACCTCGATCGAGTCTCGGCCAGGCATCCGTGCAACT TCACCAGGGTGTATGGAGGGCATACTCAGCCTACATTCAACGACAACGGTTCGATGATCTTTCTCGATCTCTCTTACAATCTGCTGACCGGTACGATTCC TAAGGAGATTGGGACAATGTCATACTTATACATTATGAATTTCGGACACAACAATTTATCTGGAAACATACCTCAGGAGCTTGGCGACCTGAAAGGTATC AACATTTTGGACCTTTCGAGCAATAGCCTCGGAGGGACTATTCCGCAGTCGATGACTGGACTTTCCTTGTTGACGGAGATCGATCTTTCGAACAACCATC TCACCGGGACGATTCCTGAAATGGGACAGTTCGAGACGTTCCAAGATCGTAGCTTTTTAAACAACTCCGGCCTCTGCGGAATCCCTCTTCCTCCCTGTGG CTCGCCCTCTCCGAACTCTCCGCAAAAGTCTCACCGGAGGAGACAAGCGTCTCTCATCTGGAGCGTTGCGATGGGGCTTTTGTTCTCGTTTTTATGCATC TTCGTTGCGTTTTTCATTTCCTCGGAGGTCAAGAGAAGGAAGAGGAAGAAGGAGGAAGCTAATCTTGATGTGTTCATGGAGAATCATAATAATTCGCAGT CCGGGAATGCTAATACGAGCTGGAAGCTGACTGGTGCGAGGGAAGCGTTGAGCATAAACCTTTCGACATTCGACAGGCCACTTCGGAGGCTGCCATTCGC GGATCTTCACCAAGCTACAAACGGCTTCCACAACGATAGTCTTATCGGTTCCGGAGGGTTTGGAGATGTGTACAAGGCTCAACTGAAAGACGGCAGTATT GTAGCAATCAAGAAGCTTATACAGATAAGCGGACAGGGCGATAGAGAATTCACCGCCGAAATGGAGACCATCGGTAAGATAAAGCACCGAAACCTCGCCC CGTTACTCGGATACTGCAAAGTGGGGGAAGAGAGGCTGTTGGTGTATGAGTACATGAAGTATGGAAGCTTGGAAGATGTTCTCCACGACCAGACGAAATC CGGGATAACACTTAACTGGAATGCGAGACGGAAGATCGCCATCGGTGCTGCGAGGGGGTTAGCATTCCTTCACCACAACTGCAGTCCACATATAATCCAC CGAGACATGAAATCGAGCAATGTACTTCTCGACGAGAATTTGGAACCGCGAGTTTCCGATTTTGGGATGGCGAGGCTTATGAGTGCCATGGACACACATC TAAGTGTGAGCACATTGGCAGGGACGCCCGGATACGTCCCTCCAGAATACTACCAAAGTTTTCGATGTTCGGTGAAAGGCGACGTGTACAGCTATGGAGT TGTGTTGCTCGAACTGTTAACAGGGAGGAGGCCTACAGATTCGGCGGATTTCGGAGACAATAATTTAGTAGGGTGGGTGAAGCAGCATGCCAAGTTAAGA ATAAGCAACGTGTTCGATCCACTGTTAATGAAAGAGGATCCGGGTTTGGAAATAGAGCTTTTGCAGCACTTGAAAGTGGCCTGTGCTTGTCTCGAGGATA GGCAATGGAAGCGGCCGACGATGATTCAAGTGATGGCGATGTTTAAGGAGATCCAAGCCGGGTCGGGGCTGGATTCGCAGTCGACTATTGGTAAAGAAGA TGATGATGGAGATTTTGTTGCGGTAGATATGATAGAGATGACTATAAAAGAAGTCCCTGAAGCAGGCTGCAAAGAGTAG
AA sequence Show only first row Show all	>Lus10020835 pacid=23177938 polypeptide=Lus10020835 locus=Lus10020835.g ID=Lus10020835.BGIv1.0 annot-version=v1.0 MLTKALLLVFPLLLLLLSSAASQDSRSLLTAFKSSLPHPPPPLLSNWVPNQDPCTFNGVKCHDNNAVSSIDLSFVPLSTDFKSVASFLLSIDSLETLSLQ SANISGSLSSGSSSKCSSVLTGLDLSLNSLSGPISDIAALSSCSGLKALNLSRNALDFSVKGKWSGLKLGLLESLDLSWNKISGSNAISFVLLGGCKDLK LLTMRGNKVAGDVDVSGCSSLEYFDISSNNFSGSALPNFGGCSSLQHLDISRNRFSGDLVRSIGSCSKLSSLNASANLFSGEIPAGLPTGNLQFLSLSGN NFQGKIPPEITDACRGLVILDLSYNNLSGEVPPALTSCTSLQTLDISVNNFTGEIPIPVLLKMVSLKRILLSYNNFVGELSDSFSAMMNLESLDVSSNDL KGQIPTGICQNPNGNLKEIFFQNNQFTGSIPASLSNCTQLTSLHLSFNYLTGTIPPSLGSLTKLQDLKLWFNQLHGEIPLEIMSIPNLQTLILDFNELTG SIPSSISNSTNLNWISLSNNKLHGEIPSSIGKLDSLAILKLSNNSLQGPIPDELGDCKSLIWLDLNTNELTGSIPSNLFKQSGKIAVNFITGKRFVFLKN EKSDYCHGTGNLLEFAGIRPENLDRVSARHPCNFTRVYGGHTQPTFNDNGSMIFLDLSYNLLTGTIPKEIGTMSYLYIMNFGHNNLSGNIPQELGDLKGI NILDLSSNSLGGTIPQSMTGLSLLTEIDLSNNHLTGTIPEMGQFETFQDRSFLNNSGLCGIPLPPCGSPSPNSPQKSHRRRQASLIWSVAMGLLFSFLCI FVAFFISSEVKRRKRKKEEANLDVFMENHNNSQSGNANTSWKLTGAREALSINLSTFDRPLRRLPFADLHQATNGFHNDSLIGSGGFGDVYKAQLKDGSI VAIKKLIQISGQGDREFTAEMETIGKIKHRNLAPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQTKSGITLNWNARRKIAIGAARGLAFLHHNCSPHIIH RDMKSSNVLLDENLEPRVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSVKGDVYSYGVVLLELLTGRRPTDSADFGDNNLVGWVKQHAKLR ISNVFDPLLMKEDPGLEIELLQHLKVACACLEDRQWKRPTMIQVMAMFKEIQAGSGLDSQSTIGKEDDDGDFVAVDMIEMTIKEVPEAGCKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10020835 [exp]	0	1
AT4G27870			Vacuolar iron transporter (VIT...		Lus10011838 [exp]	2.0	0.9194
AT2G24370			Protein kinase protein with ad...		Lus10040573 [exp]	5.3	0.9236
AT1G02260			Divalent ion symporter (.1)		Lus10027497 [exp]	7.7	0.9143
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10013994 [exp]	8.5	0.9153
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10003365 [exp]	11.0	0.9053
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10033533 [exp]	11.7	0.9078
AT5G59790			Domain of unknown function (DU...		Lus10040860 [exp]	12.1	0.8664
AT5G49960			unknown protein		Lus10013455 [exp]	12.2	0.9163
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10023637 [exp]	15.2	0.8550
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10025684 [exp]	24.1	0.8611

Compare expression of checked genes

Lus10020835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.