Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02080 258 / 4e-90 Ribosomal protein S19e family protein (.1) AT5G61170 257 / 9e-90 Ribosomal protein S19e family protein (.1) AT5G15520 254 / 1e-88 Ribosomal protein S19e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033532 [exp] 303 / 1e-107 AT3G02080 258 / 3e-90 Ribosomal protein S19e family protein (.1) Lus10013188 [exp] 287 / 2e-101 AT3G02080 259 / 2e-90 Ribosomal protein S19e family protein (.1) Lus10010339 [exp] 229 / 2e-78 AT3G02080 219 / 1e-74 Ribosomal protein S19e family protein (.1) Lus10000095 [exp] 229 / 2e-78 AT3G02080 219 / 1e-74 Ribosomal protein S19e family protein (.1) Lus10030702 [exp] 227 / 5e-78 AT3G02080 215 / 2e-73 Ribosomal protein S19e family protein (.1) Lus10021865 [exp] 226 / 2e-77 AT3G02080 216 / 7e-74 Ribosomal protein S19e family protein (.1) Lus10032992 [exp] 224 / 1e-76 AT3G02080 218 / 1e-74 Ribosomal protein S19e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G118800 [exp] 261 / 3e-91 AT5G61170 269 / 2e-94 Ribosomal protein S19e family protein (.1) Potri.017G092200 [exp] 258 / 5e-90 AT5G61170 270 / 5e-95 Ribosomal protein S19e family protein (.1) Potri.015G056100 [exp] 253 / 3e-88 AT5G61170 269 / 2e-94 Ribosomal protein S19e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01090 [flax] [poplar] Ribosomal_S19e Ribosomal protein S19e
Representative CDS sequence Show only first row Show all	>Lus10020836 pacid=23177909 polypeptide=Lus10020836 locus=Lus10020836.g ID=Lus10020836.BGIv1.0 annot-version=v1.0 ATGGCAGCTGCTGGAGATGTCATGAAGGCTGGCACCGTCAAGGATGTCTCGCCTCACGAGTTCGTCAAGGCTTATGCTGCTCACCTCAAGCGATCTGGCA AGATCGAGCTACCCCCATGGACAGATATTGTCAAGACTGGAAAACTAAAGGAACTCGCACCTTACGATCCCGACTGGTACTACATAAGAGCTGCGTCCAT GGCGAGAAAGGTTTACCTTAGGGGAGGCCTAGGTGTTGGTGCATTCCGGAGGATCTACGGTGGAAGCAAGAGGAACGGAAGCCGTCCTCCCCATTTCTGC AAGAGTAGTGGTGCTGTTGCCCGCCATATTCTTCAACAACTGGAGGCAGTCAACATTGTCGAAGTCGTTCCCACCGGAGGGAGGAGAATCACTTCGAATG GACAAAGGGATCTGGACCAAGTTGCAGGGAGGATTGTGGCTGTTGCCCCATGA
AA sequence Show only first row Show all	>Lus10020836 pacid=23177909 polypeptide=Lus10020836 locus=Lus10020836.g ID=Lus10020836.BGIv1.0 annot-version=v1.0 MAAAGDVMKAGTVKDVSPHEFVKAYAAHLKRSGKIELPPWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFC KSSGAVARHILQQLEAVNIVEVVPTGGRRITSNGQRDLDQVAGRIVAVAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02080			Ribosomal protein S19e family ...		Lus10020836 [exp]	0	1
AT1G15420			unknown protein		Lus10007894 [exp]	1.0	0.9181
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10017255 [exp]	3.5	0.8853
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10024560 [exp]	4.5	0.8626
AT1G26880			Ribosomal protein L34e superfa...		Lus10036750 [exp]	4.7	0.8915
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10032198 [exp]	5.1	0.8561
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002027 [exp]	6.5	0.8892
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10021315 [exp]	7.4	0.8848
AT1G70350			unknown protein		Lus10013008 [exp]	8.8	0.8757
AT3G52040			unknown protein		Lus10039586 [exp]	9.0	0.8661
AT3G53740			Ribosomal protein L36e family ...		Lus10016501 [exp]	9.4	0.8675

Compare expression of checked genes

Lus10020836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.