Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39380 37 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033530 [exp] 140 / 3e-41 AT4G39380 216 / 2e-64 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G086800 [exp] 37 / 0.0006 AT4G39380 245 / 2e-76 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020840 pacid=23178017 polypeptide=Lus10020840 locus=Lus10020840.g ID=Lus10020840.BGIv1.0 annot-version=v1.0 ATGAGAGGTAGTAAGAAAAAGGCAGCGAAACCAGCTGATGTCCCAGTAATAGTGAAGGATGGAACGAGTTTGTCCCAGAACAGCAAAGCCGCTAAGAGGA CTAGAAGGCAGTCTCAAAAGCCATCAGGTTTACTTCCGCAAAAAGATGAATCTCCTTTGCCTTCCACATCAGCTAGAGTAACGAATTTGTTACCAGGACT TGAGGGGAAACCAGGAACTTCTGTACCTCGTGGAAAGATCAAGTTGCAGTTATTCCCCATAGATGAAAACACGTTGAGGGGATTGGAGAAGGTGAAAAGA AAATAG
AA sequence Show only first row Show all	>Lus10020840 pacid=23178017 polypeptide=Lus10020840 locus=Lus10020840.g ID=Lus10020840.BGIv1.0 annot-version=v1.0 MRGSKKKAAKPADVPVIVKDGTSLSQNSKAAKRTRRQSQKPSGLLPQKDESPLPSTSARVTNLLPGLEGKPGTSVPRGKIKLQLFPIDENTLRGLEKVKR K

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020840 [exp]	0	1
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10017774 [exp]	4.7	0.8557
AT4G16807			unknown protein		Lus10010995 [exp]	13.1	0.8485
AT2G04865			Aminotransferase-like, plant m...		Lus10001737 [exp]	21.7	0.8507
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10009964 [exp]	30.5	0.8437
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10021418 [exp]	31.5	0.8481
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001742 [exp]	37.9	0.8478
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	40.5	0.8454
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10030262 [exp]	48.4	0.8421
AT1G79890			RAD3-like DNA-binding helicase...		Lus10011447 [exp]	53.6	0.8367
					Lus10026146 [exp]	56.0	0.8390

Compare expression of checked genes

Lus10020840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.