Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39380 87 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033530 [exp] 416 / 9e-146 AT4G39380 216 / 2e-64 unknown protein Lus10013816 [exp] 46 / 2e-05 AT2G36960 660 / 0.0 TSL-kinase interacting protein 1 (.1.2.3) Lus10026528 [exp] 41 / 0.0008 AT2G36960 526 / 4e-178 TSL-kinase interacting protein 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077700 [exp] 172 / 3e-51 AT4G39380 245 / 2e-76 unknown protein Potri.005G086800 [exp] 163 / 4e-48 AT4G39380 245 / 2e-76 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020841 pacid=23177963 polypeptide=Lus10020841 locus=Lus10020841.g ID=Lus10020841.BGIv1.0 annot-version=v1.0 ATGAATGATGGTGCTTGCTTGCCATGTACAGAAAGTGAGAAGTGGTGCAAGAAAGAGGTTGAAACAGTTGATGTAAAAAGCAAGCAAAATGAGGAAATGA ATGAAGAGACCGAAGCTGCCATTTCAAGTGGAGCAAGGGTCGATATGATTTCTTCAAATGCGTTAGTGGAACCAGAGGGTGGCAGAAGCAGGGAGGATGT TTGTGCTGGGCAGTTATCAGTACCTTGGGATGACGGCATGACTAACATCAGCATCGGAGGCTTACTATCTGAAGCATCCTTGCAGGGGAAGTTGAACAGA TCTGATCCACAAACAAATGGAAACAACTCTATGTTCTTCTCTGACTCGATCGATGCTTTCCTTGTTGCCAAAACAAGCTCATCATCACGTCCAGGGATGT TTGCTCCTAGTTTAAACTCTTCCATTTTGAATGCTGATGATACATGCCAGCCATTTTCATTTCAACCCTTCGCTTCATCAAGTAAAAAATCTGTGTCTTT CGGAGCAAGTTCTTTCCAGATTGAAAGCAAGGAAGCTGTTCCTAAGTTGTTTCAGGTCAATTCCCAACGTGGCAATCCGGAAGGTCAGGGAAGTCGCGAG TCTGAAACAAATATGCTGGCTTGTCCAGGTCCAGGAGCATATAACGATGAAAGCAGCCTTGGACTATCCGGCATAAAATGGACGGAGTCCCTCGGACCTT TTGATCTTGGCCTAACTTCCTCTAGAAAGATTATTCCAGATGACAGTCTAAGCCTTGGCAGAATATTCAGCTAA
AA sequence Show only first row Show all	>Lus10020841 pacid=23177963 polypeptide=Lus10020841 locus=Lus10020841.g ID=Lus10020841.BGIv1.0 annot-version=v1.0 MNDGACLPCTESEKWCKKEVETVDVKSKQNEEMNEETEAAISSGARVDMISSNALVEPEGGRSREDVCAGQLSVPWDDGMTNISIGGLLSEASLQGKLNR SDPQTNGNNSMFFSDSIDAFLVAKTSSSSRPGMFAPSLNSSILNADDTCQPFSFQPFASSSKKSVSFGASSFQIESKEAVPKLFQVNSQRGNPEGQGSRE SETNMLACPGPGAYNDESSLGLSGIKWTESLGPFDLGLTSSRKIIPDDSLSLGRIFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39380			unknown protein		Lus10020841 [exp]	0	1
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	3.5	0.8378
AT1G73600			S-adenosyl-L-methionine-depend...		Lus10009056 [exp]	5.6	0.8378
AT5G50930			Histone superfamily protein (....		Lus10022425 [exp]	8.9	0.8306
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10001240 [exp]	10.2	0.7803
AT1G67590			Remorin family protein (.1.2)		Lus10015817 [exp]	13.9	0.8224
AT2G25100			Polynucleotidyl transferase, r...		Lus10028856 [exp]	14.6	0.8357
AT5G62290			nucleotide-sensitive chloride ...		Lus10038909 [exp]	17.5	0.8292
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	18.3	0.7664
AT2G24400			SAUR-like auxin-responsive pro...		Lus10026977 [exp]	21.4	0.7524
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10014390 [exp]	22.3	0.8052

Compare expression of checked genes

Lus10020841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.