Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09890 69 / 2e-16 Protein of unknown function (DUF3511) (.1) AT5G11970 56 / 3e-11 Protein of unknown function (DUF3511) (.1) AT2G47480 56 / 5e-11 Protein of unknown function (DUF3511) (.1) AT2G19460 53 / 6e-10 Protein of unknown function (DUF3511) (.1) AT3G13910 50 / 8e-09 Protein of unknown function (DUF3511) (.1) AT3G05725 50 / 2e-08 Protein of unknown function (DUF3511) (.1) AT1G72720 48 / 7e-08 Protein of unknown function (DUF3511) (.1) AT3G62640 46 / 3e-07 Protein of unknown function (DUF3511) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033529 [exp] 134 / 5e-42 AT4G09890 70 / 2e-17 Protein of unknown function (DUF3511) (.1) Lus10005802 [exp] 102 / 2e-29 AT4G09890 71 / 1e-17 Protein of unknown function (DUF3511) (.1) Lus10006799 [exp] 101 / 4e-29 AT4G09890 70 / 2e-17 Protein of unknown function (DUF3511) (.1) Lus10028734 [exp] 71 / 7e-17 AT4G09890 69 / 8e-17 Protein of unknown function (DUF3511) (.1) Lus10028690 [exp] 68 / 6e-16 AT4G09890 71 / 1e-17 Protein of unknown function (DUF3511) (.1) Lus10011939 [exp] 56 / 1e-10 AT2G19460 109 / 6e-32 Protein of unknown function (DUF3511) (.1) Lus10027629 [exp] 56 / 1e-10 AT2G19460 110 / 2e-32 Protein of unknown function (DUF3511) (.1) Lus10021581 [exp] 51 / 7e-09 AT5G11970 97 / 4e-27 Protein of unknown function (DUF3511) (.1) Lus10017155 [exp] 51 / 8e-09 AT5G11970 93 / 1e-25 Protein of unknown function (DUF3511) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077500 [exp] 87 / 1e-23 AT4G09890 80 / 3e-21 Protein of unknown function (DUF3511) (.1) Potri.002G065200 [exp] 78 / 9e-20 AT4G09890 84 / 9e-23 Protein of unknown function (DUF3511) (.1) Potri.005G195800 [exp] 75 / 8e-19 AT4G09890 81 / 1e-21 Protein of unknown function (DUF3511) (.1) Potri.001G197700 [exp] 57 / 1e-11 AT2G19460 78 / 1e-19 Protein of unknown function (DUF3511) (.1) Potri.014G123600 [exp] 55 / 1e-10 AT2G47480 93 / 5e-26 Protein of unknown function (DUF3511) (.1) Potri.006G147700 [exp] 55 / 2e-10 AT2G19460 96 / 2e-26 Protein of unknown function (DUF3511) (.1) Potri.006G225900 [exp] 53 / 7e-10 AT5G11970 90 / 2e-24 Protein of unknown function (DUF3511) (.1) Potri.003G043600 [exp] 52 / 2e-09 AT5G11970 89 / 5e-24 Protein of unknown function (DUF3511) (.1) Potri.005G019900 [exp] 49 / 1e-08 AT3G05725 63 / 3e-14 Protein of unknown function (DUF3511) (.1) Potri.010G140800 [exp] 47 / 8e-08 AT2G47480 62 / 2e-14 Protein of unknown function (DUF3511) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12023 [flax] [poplar] DUF3511 Domain of unknown function (DUF3511)
Representative CDS sequence Show only first row Show all	>Lus10020842 pacid=23177934 polypeptide=Lus10020842 locus=Lus10020842.g ID=Lus10020842.BGIv1.0 annot-version=v1.0 ATGGACAAGCCAGCTTGCAAACTGGCACAACTCATGAACTCGTTAAGCCAGCCTTGCAAGTTCGATCATTTTCAGCTCATGAGCCAGCTCAGCTTGGATA GCATGCAAGCACTCGAGAAGAGCTCATCTATCACCTCACAAGCTGAACTCGATTACAATGGTTACTCCGCAATGAGGAGGGTGGAGTACCTGGAGGACAA GTCAAAAGTGTACAGCTTCAACGGGAAAGACAGTGGTGAATCCGGGAGTGAGAATCCAGAGCTCAAAAGGAGGAAGAGGGTGGCTCAGTACAACATCTAC TCCGTCGAAGCTAAGCTCAAATCATCTCTCAGAAACAGCTTCAAGTGGATCAAGAACAAGTTCGTTGCGGACCACTTCCACGATTGA
AA sequence Show only first row Show all	>Lus10020842 pacid=23177934 polypeptide=Lus10020842 locus=Lus10020842.g ID=Lus10020842.BGIv1.0 annot-version=v1.0 MDKPACKLAQLMNSLSQPCKFDHFQLMSQLSLDSMQALEKSSSITSQAELDYNGYSAMRRVEYLEDKSKVYSFNGKDSGESGSENPELKRRKRVAQYNIY SVEAKLKSSLRNSFKWIKNKFVADHFHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09890			Protein of unknown function (D...		Lus10020842 [exp]	0	1
AT4G09890			Protein of unknown function (D...		Lus10033529 [exp]	7.1	0.8978
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	12.1	0.9248
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10041491 [exp]	14.7	0.9040
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10034336 [exp]	14.8	0.8993
AT4G25315			Expressed protein (.1.2)		Lus10019851 [exp]	15.4	0.8680
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10034775 [exp]	15.4	0.8680
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Lus10005769 [exp]	20.0	0.8801
AT3G51980			ARM repeat superfamily protein...		Lus10023269 [exp]	20.1	0.9035
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	20.9	0.9198
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10036603 [exp]	24.9	0.9128

Compare expression of checked genes

Lus10020842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.