Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39370 407 / 1e-137 UBP27 ubiquitin-specific protease 27 (.1.2.3) AT2G32780 60 / 3e-09 ATUBP1 ubiquitin-specific protease 1 (.1) AT1G32850 59 / 8e-09 UBP11 ubiquitin-specific protease 11 (.1) AT4G10570 58 / 1e-08 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 57 / 4e-08 UBP10 ubiquitin-specific protease 10 (.1.2) AT1G04860 56 / 4e-08 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT2G24640 56 / 5e-08 UBP19 ubiquitin-specific protease 19 (.1.2) AT5G57990 56 / 6e-08 UBP23 ubiquitin-specific protease 23 (.1) AT2G22310 55 / 7e-08 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT4G31670 54 / 1e-07 UBP18 ubiquitin-specific protease 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033528 [exp] 981 / 0 AT4G39370 421 / 8e-143 ubiquitin-specific protease 27 (.1.2.3) Lus10020116 [exp] 60 / 4e-09 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10009273 [exp] 60 / 4e-09 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10026918 [exp] 59 / 6e-09 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10017343 [exp] 57 / 5e-08 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10001661 [exp] 56 / 8e-08 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10027289 [exp] 55 / 2e-07 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10035825 [exp] 55 / 2e-07 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10038994 [exp] 55 / 2e-07 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077100 [exp] 576 / 0 AT4G39370 342 / 6e-112 ubiquitin-specific protease 27 (.1.2.3) Potri.017G055600 [exp] 65 / 7e-11 AT1G04860 524 / 1e-170 ubiquitin-specific protease 2 (.1) Potri.001G315600 [exp] 65 / 8e-11 AT1G04860 479 / 2e-153 ubiquitin-specific protease 2 (.1) Potri.006G266100 [exp] 63 / 3e-10 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1) Potri.016G031900 [exp] 62 / 5e-10 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.006G033800 [exp] 61 / 1e-09 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.011G152500 [exp] 57 / 2e-08 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.001G449000 [exp] 57 / 3e-08 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.007G093600 [exp] 55 / 8e-08 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.018G017000 [exp] 54 / 2e-07 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10020843 pacid=23177958 polypeptide=Lus10020843 locus=Lus10020843.g ID=Lus10020843.BGIv1.0 annot-version=v1.0 ATGATCCTGCTCGAGGTGAGAGAGCCCCTGCCGCAAGCGTGGTTAGCCGCCGCCGGTTTGATCGTTGCCGTCATAAGGGATCGACAATTGGGCTTCCTTT GGTTGCCTCAGAGAAAAGATCGCCGGGATGAAGTGCTATTAGTACCTGGCGTCCAGAACTTGGGGAACAATTGCTTTCTGAATGTGATACTCCAGGCTTT GGCAAGTTGCTCCCTTTTCCAACCCTTTCTTCACAAGATAATTGAAGATTGCGAATCCGAGGATTGGAGTGATGGTTTGCAGCTAACTGTTGCTTTGGCT TCTTTGTTGGAAGATTTATGTGCATATGGAGAAGGCAGGACAGTGTTAAGTCCACGGCAGGTGATGCTTGCAATGTCTCAGTATATACGGAACTTCAACC TTACCAGCCAACAGGATGCAGAAGAAGCGTTCCTTCACTTGCTGTCCTCTTTGAGAAAAGAATTTACCGATTGTTACCTTCCGAACCAGAGTTCACTGTT AGAGATTGTTGAAACTTTCCATTCCAGGATTCTGACACCAAAAGGACATCAACTTCAGAATGAAAACGAAAGATGGCAGCAACACGTCCTTGGACCATTC GACGGTATTCTTAGCAGCACGTTTATCTGCCAAACTTGCTCTTGTCAGATTTCAATGAACTTCCAATTCTTCCATAGTTTGCCCCTTTCGCCGGTGCTTG GATTTGGTGCCCCAATTATGGTTGGATGCACACTGGAGGATTGCCTAAAGCGGTTTATAGCTCCTGAGCAACTTGATAATTATCACTGTAGCCATTGCTG GCATCTTGTTGCCATCAAATATCTACGTCTAAGAGGAGCATTAGAGTGCGATATTGAGAAAGTCACGAGATGCACCGAGAACGAATCATGCTCATGTCGT AGGCATTTGCATCTAGAGAATCTACCTTGGTCGAATAACTACTCACGAACTTTGAAGGGACTTAGTATTGCTCGTTGCCCAAAGATTCTTTGCGTTCATC TGCAACGTGCTTCGATTAATCACTTTGGAGAGCCAATCAAACTTCAGGGCCATATTCGGTTTCCCTTAGTTTTGGACCTGCTTCCATTTACACTGAAAGA GTTACAATCAGAAAAACAAACCTCTTGTTCGAACAAACCCAACGTGTCATCATCTCATCCGGTGGTTCGAGCTTGCATCAGTATCCAAAATCTAGCATCT GAAGAAGTATTAGCATCAGACAAACTTGAGTCCTCCGAGCAATTGCAGACTGTCATAGGAGAGCCTAAGTTGGTCGAAACAAAATTCGATGTGGAGACTA TTGGAGAGGATACAAACTTCCCAGCTGAGGACAAGGTGCATGAAGTGGTGTCCTCGGAATCTTACATGTATCGTCTCGTATCAGTGGTGGAGCACTTTGG TCGATCAGGAGGTGGTCACTATACTATTTACAGAAGCGCGAGGTGCGATTCCACTGAGGACAGTGGGGAGGAGGAGAAGAAGCCTTCCAATCTGCAGTGG TTCTGCGTATCGGATTCCCAGGTTTCTCGAGTCTCGGAGGAGGATGTTCTTGGTGCAGAGGCAAGCTTGCTGTTTTATGAAAGAATTGCACAATGCTGA
AA sequence Show only first row Show all	>Lus10020843 pacid=23177958 polypeptide=Lus10020843 locus=Lus10020843.g ID=Lus10020843.BGIv1.0 annot-version=v1.0 MILLEVREPLPQAWLAAAGLIVAVIRDRQLGFLWLPQRKDRRDEVLLVPGVQNLGNNCFLNVILQALASCSLFQPFLHKIIEDCESEDWSDGLQLTVALA SLLEDLCAYGEGRTVLSPRQVMLAMSQYIRNFNLTSQQDAEEAFLHLLSSLRKEFTDCYLPNQSSLLEIVETFHSRILTPKGHQLQNENERWQQHVLGPF DGILSSTFICQTCSCQISMNFQFFHSLPLSPVLGFGAPIMVGCTLEDCLKRFIAPEQLDNYHCSHCWHLVAIKYLRLRGALECDIEKVTRCTENESCSCR RHLHLENLPWSNNYSRTLKGLSIARCPKILCVHLQRASINHFGEPIKLQGHIRFPLVLDLLPFTLKELQSEKQTSCSNKPNVSSSHPVVRACISIQNLAS EEVLASDKLESSEQLQTVIGEPKLVETKFDVETIGEDTNFPAEDKVHEVVSSESYMYRLVSVVEHFGRSGGGHYTIYRSARCDSTEDSGEEEKKPSNLQW FCVSDSQVSRVSEEDVLGAEASLLFYERIAQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39370		UBP27	ubiquitin-specific protease 27...		Lus10020843 [exp]	0	1
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10021888 [exp]	1.0	0.9168
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	3.7	0.8969
AT1G05410			Protein of unknown function (D...		Lus10010550 [exp]	9.6	0.8865
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10014653 [exp]	11.0	0.8752
AT3G03560			unknown protein		Lus10005694 [exp]	13.4	0.8414
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	13.6	0.8943
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10035357 [exp]	14.1	0.8679
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	19.0	0.8629
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	19.4	0.8765
AT5G46550			DNA-binding bromodomain-contai...		Lus10011989 [exp]	21.5	0.8691

Compare expression of checked genes

Lus10020843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.