Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50020 378 / 4e-129 DHHC-type zinc finger family protein (.1.2) AT4G24630 376 / 7e-129 DHHC-type zinc finger family protein (.1) AT3G26935 337 / 4e-113 DHHC-type zinc finger family protein (.1) AT5G41060 323 / 6e-108 DHHC-type zinc finger family protein (.1.2) AT3G48760 293 / 3e-95 DHHC-type zinc finger family protein (.1) AT3G56930 292 / 4e-95 DHHC-type zinc finger family protein (.1.2) AT5G05070 274 / 7e-89 DHHC-type zinc finger family protein (.1) AT2G40990 244 / 3e-77 DHHC-type zinc finger family protein (.1) AT3G56920 231 / 4e-73 DHHC-type zinc finger family protein (.1) AT2G14255 87 / 2e-18 Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033527 [exp] 614 / 0 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 387 / 9e-133 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 375 / 2e-127 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 354 / 1e-119 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 349 / 7e-118 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 303 / 4e-99 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 300 / 4e-98 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 283 / 8e-92 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10027274 [exp] 263 / 2e-84 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077000 [exp] 437 / 1e-153 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 402 / 8e-139 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 399 / 1e-137 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 338 / 2e-113 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 332 / 4e-111 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 323 / 2e-107 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 320 / 1e-106 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 310 / 2e-102 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 306 / 8e-101 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 296 / 3e-96 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10020844 pacid=23177895 polypeptide=Lus10020844 locus=Lus10020844.g ID=Lus10020844.BGIv1.0 annot-version=v1.0 ATGGCAACCCGACTTTACCAATCCTGGAAAGGCCGCAATATATTCCTGTTCAAAGGGAGGATAATCCTTGGACCAGATGCAAGGTCAGTGGGGATCACCT TGTTGCTAATAGTGGTACCAGTTATCATCTTCTGCACATGTGTAGCTACCAACCTTGTCAAGGAATTCCCTCCAACATCTACCCTACGCTACGCCATCCC TTTGGCATCCATTCTCTTCACAATCTACGTCAGTCAAAGTCTCCATCTTTCCCTTACGCTAAGTTCCCACAAGAAAGAGTACTCTTTATGGTTCTCATCT TTTGTGTTCACCATGATCATTGTTAGTATGCAGGTATTAGTACTGCTTCTTGTTACTTCAGGACGAGACCCGGGCATCGTTCCGAGGAATAATCATCCAC TAGAAGATGACAGTTTCCACAATTCAGTTAGAATGGAGGGGAGTGGGACACAGACTCCAACACCAAGGCTACCTAGGATGAAAGAAGTGTTTGTCAATGG TCTGCCTGTTAAAGTCAAGTACTGTGAGACTTGCTTGCTGTATCGCCCGCCCCGTTGCTCCCATTGCTCCGTTTGTGATAACTGCGTCGAGAGATTTGAT CACCATTGCCCTTGGGTTGGCCAGTGCATTGGAGTGCGGAACTATCGATACTTCTTTCTCTTCGTTTCATCATCAGCTCTTCTCTGCATCTATGTCCTTG CAATGTCAGCTTGGAACATGAAGTTCCTCATTGACAGGCACGATGTACTTTGGAAGGCAATCAAAGAGTCCCCAGCATCAGTAGTCCTCGTCATCTACTG CTTCATTTTCCTATGGTTTGTTGGAGGCCTCACTTGTTTCCATCTCTATCTCATTAGCAGAAACCAGACTACGTACGAGAATTTTCGATATGGAGCTGTG AATCGGGTGAATGTGTATGATAGAGGGTGCGTGAGGAACTTCCTTGAAGTGTTCTGCACCAAGACTAAGCCTTCCAGGAACGATTTCCGGGCATTTGTGC GAGAAGATCAGCAATTGCCAACAGTGCTGCATTTCAGTGAAGGCAATAATGTTGGTGTAGATGGCGGTGACCGTAGAGTGAAGGTGGAGGACAACTCGGA GATTGATAAGGACTTCATGAAGATCTCCGAGCGGCATATTGCTATACAAGATGGCATCTGA
AA sequence Show only first row Show all	>Lus10020844 pacid=23177895 polypeptide=Lus10020844 locus=Lus10020844.g ID=Lus10020844.BGIv1.0 annot-version=v1.0 MATRLYQSWKGRNIFLFKGRIILGPDARSVGITLLLIVVPVIIFCTCVATNLVKEFPPTSTLRYAIPLASILFTIYVSQSLHLSLTLSSHKKEYSLWFSS FVFTMIIVSMQVLVLLLVTSGRDPGIVPRNNHPLEDDSFHNSVRMEGSGTQTPTPRLPRMKEVFVNGLPVKVKYCETCLLYRPPRCSHCSVCDNCVERFD HHCPWVGQCIGVRNYRYFFLFVSSSALLCIYVLAMSAWNMKFLIDRHDVLWKAIKESPASVVLVIYCFIFLWFVGGLTCFHLYLISRNQTTYENFRYGAV NRVNVYDRGCVRNFLEVFCTKTKPSRNDFRAFVREDQQLPTVLHFSEGNNVGVDGGDRRVKVEDNSEIDKDFMKISERHIAIQDGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50020			DHHC-type zinc finger family p...		Lus10020844 [exp]	0	1
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10031681 [exp]	2.8	0.8023
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10005103 [exp]	12.0	0.6908
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	13.6	0.7356
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	14.4	0.7402
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10027927 [exp]	15.0	0.7166
AT5G50335			unknown protein		Lus10008207 [exp]	20.8	0.7306
AT1G68330			unknown protein		Lus10041430 [exp]	21.8	0.6691
AT1G74160			unknown protein		Lus10034678 [exp]	23.2	0.7193
AT4G32000			Protein kinase superfamily pro...		Lus10001937 [exp]	25.4	0.6888
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	28.5	0.7042

Compare expression of checked genes

Lus10020844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.