Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21790 1434 / 0 ATRNR1, RNR1, CLS8, RIBONUCLEOTIDEREDUCTASE,REDUCTASEPROTEINR1, R1, RIBONUCLEOTIDEREDUCTASE, REDUCT CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033526 [exp] 1597 / 0 AT2G21790 1514 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1) Lus10018867 [exp] 1295 / 0 AT2G21790 1358 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G087300 [exp] 1478 / 0 AT2G21790 1450 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1) Potri.007G076700 [exp] 1474 / 0 AT2G21790 1448 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1) Potri.005G194900 [exp] 1373 / 0 AT2G21790 1421 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0339 [flax] [poplar] PFL-like PF02867 [flax] [poplar] Ribonuc_red_lgC Ribonucleotide reductase, barrel domain CL0339 [flax] [poplar] PF03477 [flax] [poplar] ATP-cone ATP cone domain CL0339 [flax] [poplar] PF00317 [flax] [poplar] Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain
Representative CDS sequence Show only first row Show all	>Lus10020845 pacid=23177989 polypeptide=Lus10020845 locus=Lus10020845.g ID=Lus10020845.BGIv1.0 annot-version=v1.0 ATGTATGTAGTGAAGAGAGATGGGAGACAGGAAACTGTCCACTTTGACAAGATCACGGCCAGGCTCAAGAAGCTAAGCTATGGCCTCAGCATCGACCACT GCGACCCTGTCCTCGTCGCCCAAAAGGTCTGTGCCGGAGTCTACAAGGGTGTCACCACCAGCCAGCTCGATGAATTGGCTGCTGAGACTGCTGCTGCTAT GACTGCGAACCATCCTGATTATGCCTCCTTGGCTGCGAGGATTGCTGTGTCGAATCTGCATAAGAACACTATGAAGTCCTTCTCAGAGACTATCAAAGTT ATGTACACTCATTTCAACGAGAGATCTGGATTGAAGGCTCCTTTGATTGCCGACGATGTGTATGATATAATCATGAAGAATGCAGCACGACTGGACAGTG AGATAATCTATGACCGTGACTTTGATTATGATTATTTTGGATTCAAGACCCTGGAGAGGTCATACCTATTAAAGGTCCAAGGAAAGGTTGTAGAAAGGCC TCAACACATGCTAATGAGGGTTTCTGTTGGAATCCACAAGGATGACATTGATTCGGCTATTAAAACATACCACTTCATGTCTCAACGATGGTTTACTCAT GCTTCTCCCACCCTTTTCAATGCTGGAACACCAAGACCACAGTTGAGCAGTTGTTTCTTGGTATGCATGAAGGATGATAGCATCGAAGGAATATATGAGA CGCTAAAGGAGTGTGCTGTTATCAGCAAATCTGCTGGAGGGATTGGTGTGTCTGTTCATAATATCCGTGCCACTGGAAGTTATATCCGTGGAACTAATGG GGCATCTAATGGCATTGTTCCCATGTTAAGGGTGTTCAATGATACTGCTCGATATGTTGATCAAGGAGGGGGCAAGAGGAAAGGTGCTTTTGCTGTGTAC CTGGAGCCATGGCATGCAGATATATTTGAGTTCCTTGACCTCAGAAAAAACCATGGATCGGAAGAACATCGGGCAAGGGACCTGTTCTATGCCCTTTGGG TGCCAGATCTTTTCATGGAAAGAGTCCAAAGTAATGGAACATGGTCTTTGTTTTGTCCTAATGAGGCACCTGGCTTGGCTGATTGTTGGGGCAAAGAATT TGAGGAGTTGTACACCACATATGAAAGAAATGGCAAAGCCAAGAAGGTTGTACAGGCGCAAAGTTTGTGGTTTGAAATATTGACTTCTCAGATAGAAACT GGAACCCCTTACATGCTTTTTAAGGACACCTGCAACAGGAAAAGCAACCAGCAGAATCTGGGAACAATTAAATCTTCAAATTTGTGTACTGAGATCATTG AGTATACAAGTCCCACGGAAACTGCTGTGTGCAATTTGGCATCAATTGCACTACCTCGCTTTGTTAGAGAAAAAGGAGTGCCAATGGAATCACACCCATC TAAGCTTGTTGGAAGCAGAGGATCCATGAACAGATTCTTTGATTTTGACAAATTAGCTGAGATTACACAAGCGGTGACTTATAATCTCAACAAAATCATC GATGTTAACTATTACCCTGTTGAGACTGCAAGGAGGTCAAATTTAAGACACAGGCCGATTGGAATTGGAGTCCAGGGTCTTGCTGATACCTTCATTTTAC TTGGCATGCCATTTGAGTCCCCAGAGGCTCAACAGCTAAACAAGGATATATTTGAAACGATTTATTACCATTCCTTGAAAGCATCTTGTGAGATTGCAGC AGTAGAAGGTCCTTATGAAACATATGCTGGAAGTCCCGTGAGTAAGGGTACTTTTCAGCCAGATATGTGGGGGGTCACTCCATCGACTTTGTGGAACTGG GAGGTCTTGAGAGAGATGATATCAAAGAACGGTGTCAGGAACTCACTTCTGGTGGCACCTATGCCTACTGCTTCAACCAGTCAGATTCTTGGAAACAATG AGTGCTTTGAGCCATACACTTCCAATATCTATAGTCGCAGGGTTTTAAGTGGTGAATTTGTTGTAGTCAACAAACATCTTCTGAATGATCTGACTGAGAT GGGTATATGGTCCCCTGCTATCAAGAATAGAATCATTTACGAAAATGGTTCTGTCCAGAAGCTCCCTGAAATCCCTGAGGATCTGAAGCTAATTTACAAG ACCGTATGGGAGATCAAGCAGAAGACTTTGGTGGATATGGCTGTTGATCGTGGATGCTACATAGATCAGAGCCAAAGCCTTAACATACACATGGACCAAC CCAATTTCGGAAAACTGACTTCCTTGCATTTCCATACATGGTCCAAGGGTCTAAAGACAGGAATGTACTATCTAAGATCACGAGCTGCAGCCGATGCAAT CAAGTTTACAGTAGACACCACCGATCTCAAGGATAAGAAGACAAAGGTGGAGGCTGAAGACGGTGGTGATGATGGTACCAAAATGGCACAGATGGTCTGC TCTCTAAGCAACCGTGACGAATGTCTCGCTTGCGGAAGTTGA
AA sequence Show only first row Show all	>Lus10020845 pacid=23177989 polypeptide=Lus10020845 locus=Lus10020845.g ID=Lus10020845.BGIv1.0 annot-version=v1.0 MYVVKRDGRQETVHFDKITARLKKLSYGLSIDHCDPVLVAQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAARIAVSNLHKNTMKSFSETIKV MYTHFNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVSVGIHKDDIDSAIKTYHFMSQRWFTH ASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGASNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY LEPWHADIFEFLDLRKNHGSEEHRARDLFYALWVPDLFMERVQSNGTWSLFCPNEAPGLADCWGKEFEELYTTYERNGKAKKVVQAQSLWFEILTSQIET GTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPMESHPSKLVGSRGSMNRFFDFDKLAEITQAVTYNLNKII DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFESPEAQQLNKDIFETIYYHSLKASCEIAAVEGPYETYAGSPVSKGTFQPDMWGVTPSTLWNW EVLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLNDLTEMGIWSPAIKNRIIYENGSVQKLPEIPEDLKLIYK TVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHTWSKGLKTGMYYLRSRAAADAIKFTVDTTDLKDKKTKVEAEDGGDDGTKMAQMVC SLSNRDECLACGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10020845 [exp]	0	1
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10033526 [exp]	1.4	0.9494
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10019338 [exp]	2.0	0.9564
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10038861 [exp]	4.9	0.9235
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Lus10042152 [exp]	5.7	0.9176
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	8.9	0.9359
AT5G62360			Plant invertase/pectin methyle...		Lus10024596 [exp]	11.5	0.9087
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	11.6	0.9360
AT3G57060			binding (.1.2)		Lus10039013 [exp]	14.9	0.9295
AT3G21540			transducin family protein / WD...		Lus10033802 [exp]	15.5	0.9142
AT3G15550			unknown protein		Lus10025758 [exp]	16.0	0.9302

Compare expression of checked genes

Lus10020845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.